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The IPD Project: a centralised resource for the study of polymorphism in genes of the immune system

The Immuno Polymorphism Database (IPD), https://www.ebi.ac.uk/ipd/, is a set of specialist databases that enable the study of polymorphic genes which function as part of the vertebrate immune system. The major focus is on the hyperpolymorphic major histocompatibility complex (MHC) genes and the kill...

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Autores principales: Maccari, Giuseppe, Robinson, James, Hammond, John A., Marsh, Steven G. E.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Berlin Heidelberg 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6970959/
https://www.ncbi.nlm.nih.gov/pubmed/31641782
http://dx.doi.org/10.1007/s00251-019-01133-w
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author Maccari, Giuseppe
Robinson, James
Hammond, John A.
Marsh, Steven G. E.
author_facet Maccari, Giuseppe
Robinson, James
Hammond, John A.
Marsh, Steven G. E.
author_sort Maccari, Giuseppe
collection PubMed
description The Immuno Polymorphism Database (IPD), https://www.ebi.ac.uk/ipd/, is a set of specialist databases that enable the study of polymorphic genes which function as part of the vertebrate immune system. The major focus is on the hyperpolymorphic major histocompatibility complex (MHC) genes and the killer-cell immunoglobulin-like receptor (KIR) genes, by providing the official repository and primary source of sequence data. Databases are centred around humans as well as animals important for food security, for companionship and as disease models. The IPD project works with specialist groups or nomenclature committees who provide and manually curate individual sections before they are submitted for online publication. To reflect the recent advance of allele sequencing technologies and the increasing demands of novel tools for the analysis of genomic variation, the IPD project is undergoing a progressive redesign and reorganisation. In this review, recent updates and future developments are discussed, with a focus on the core concepts to better future-proof the project.
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spelling pubmed-69709592020-01-31 The IPD Project: a centralised resource for the study of polymorphism in genes of the immune system Maccari, Giuseppe Robinson, James Hammond, John A. Marsh, Steven G. E. Immunogenetics Review The Immuno Polymorphism Database (IPD), https://www.ebi.ac.uk/ipd/, is a set of specialist databases that enable the study of polymorphic genes which function as part of the vertebrate immune system. The major focus is on the hyperpolymorphic major histocompatibility complex (MHC) genes and the killer-cell immunoglobulin-like receptor (KIR) genes, by providing the official repository and primary source of sequence data. Databases are centred around humans as well as animals important for food security, for companionship and as disease models. The IPD project works with specialist groups or nomenclature committees who provide and manually curate individual sections before they are submitted for online publication. To reflect the recent advance of allele sequencing technologies and the increasing demands of novel tools for the analysis of genomic variation, the IPD project is undergoing a progressive redesign and reorganisation. In this review, recent updates and future developments are discussed, with a focus on the core concepts to better future-proof the project. Springer Berlin Heidelberg 2019-10-22 2020 /pmc/articles/PMC6970959/ /pubmed/31641782 http://dx.doi.org/10.1007/s00251-019-01133-w Text en © The Author(s) 2019 Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made.
spellingShingle Review
Maccari, Giuseppe
Robinson, James
Hammond, John A.
Marsh, Steven G. E.
The IPD Project: a centralised resource for the study of polymorphism in genes of the immune system
title The IPD Project: a centralised resource for the study of polymorphism in genes of the immune system
title_full The IPD Project: a centralised resource for the study of polymorphism in genes of the immune system
title_fullStr The IPD Project: a centralised resource for the study of polymorphism in genes of the immune system
title_full_unstemmed The IPD Project: a centralised resource for the study of polymorphism in genes of the immune system
title_short The IPD Project: a centralised resource for the study of polymorphism in genes of the immune system
title_sort ipd project: a centralised resource for the study of polymorphism in genes of the immune system
topic Review
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6970959/
https://www.ncbi.nlm.nih.gov/pubmed/31641782
http://dx.doi.org/10.1007/s00251-019-01133-w
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