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The SUSTech-SYSU dataset for automatically segmenting and classifying corneal ulcers

Corneal ulcer is a common ophthalmic symptom. Segmentation algorithms are needed to identify and quantify corneal ulcers from ocular staining images. Developments of such algorithms have been obstructed by a lack of high quality datasets (the ocular staining images and the corresponding gold-standar...

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Autores principales: Deng, Lijie, Lyu, Junyan, Huang, Haixiang, Deng, Yuqing, Yuan, Jin, Tang, Xiaoying
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6971241/
https://www.ncbi.nlm.nih.gov/pubmed/31959768
http://dx.doi.org/10.1038/s41597-020-0360-7
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author Deng, Lijie
Lyu, Junyan
Huang, Haixiang
Deng, Yuqing
Yuan, Jin
Tang, Xiaoying
author_facet Deng, Lijie
Lyu, Junyan
Huang, Haixiang
Deng, Yuqing
Yuan, Jin
Tang, Xiaoying
author_sort Deng, Lijie
collection PubMed
description Corneal ulcer is a common ophthalmic symptom. Segmentation algorithms are needed to identify and quantify corneal ulcers from ocular staining images. Developments of such algorithms have been obstructed by a lack of high quality datasets (the ocular staining images and the corresponding gold-standard ulcer segmentation labels), especially for supervised learning based segmentation algorithms. In such context, we prepare a dataset containing 712 ocular staining images and the associated segmentation labels of flaky corneal ulcers. In addition to segmentation labels for flaky corneal ulcers, we also provide each image with three-fold class labels: firstly, each image has a label in terms of its general ulcer pattern; secondly, each image has a label in terms of its specific ulcer pattern; thirdly, each image has a label indicating its ulcer severity degree. This dataset not only provides an excellent opportunity for investigating the accuracy and reliability of different segmentation and classification algorithms for corneal ulcers, but also advances the development of new supervised learning based algorithms especially those in the deep learning framework.
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spelling pubmed-69712412020-01-28 The SUSTech-SYSU dataset for automatically segmenting and classifying corneal ulcers Deng, Lijie Lyu, Junyan Huang, Haixiang Deng, Yuqing Yuan, Jin Tang, Xiaoying Sci Data Data Descriptor Corneal ulcer is a common ophthalmic symptom. Segmentation algorithms are needed to identify and quantify corneal ulcers from ocular staining images. Developments of such algorithms have been obstructed by a lack of high quality datasets (the ocular staining images and the corresponding gold-standard ulcer segmentation labels), especially for supervised learning based segmentation algorithms. In such context, we prepare a dataset containing 712 ocular staining images and the associated segmentation labels of flaky corneal ulcers. In addition to segmentation labels for flaky corneal ulcers, we also provide each image with three-fold class labels: firstly, each image has a label in terms of its general ulcer pattern; secondly, each image has a label in terms of its specific ulcer pattern; thirdly, each image has a label indicating its ulcer severity degree. This dataset not only provides an excellent opportunity for investigating the accuracy and reliability of different segmentation and classification algorithms for corneal ulcers, but also advances the development of new supervised learning based algorithms especially those in the deep learning framework. Nature Publishing Group UK 2020-01-20 /pmc/articles/PMC6971241/ /pubmed/31959768 http://dx.doi.org/10.1038/s41597-020-0360-7 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver http://creativecommons.org/publicdomain/zero/1.0/ applies to the metadata files associated with this article.
spellingShingle Data Descriptor
Deng, Lijie
Lyu, Junyan
Huang, Haixiang
Deng, Yuqing
Yuan, Jin
Tang, Xiaoying
The SUSTech-SYSU dataset for automatically segmenting and classifying corneal ulcers
title The SUSTech-SYSU dataset for automatically segmenting and classifying corneal ulcers
title_full The SUSTech-SYSU dataset for automatically segmenting and classifying corneal ulcers
title_fullStr The SUSTech-SYSU dataset for automatically segmenting and classifying corneal ulcers
title_full_unstemmed The SUSTech-SYSU dataset for automatically segmenting and classifying corneal ulcers
title_short The SUSTech-SYSU dataset for automatically segmenting and classifying corneal ulcers
title_sort sustech-sysu dataset for automatically segmenting and classifying corneal ulcers
topic Data Descriptor
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6971241/
https://www.ncbi.nlm.nih.gov/pubmed/31959768
http://dx.doi.org/10.1038/s41597-020-0360-7
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