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The SUSTech-SYSU dataset for automatically segmenting and classifying corneal ulcers
Corneal ulcer is a common ophthalmic symptom. Segmentation algorithms are needed to identify and quantify corneal ulcers from ocular staining images. Developments of such algorithms have been obstructed by a lack of high quality datasets (the ocular staining images and the corresponding gold-standar...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6971241/ https://www.ncbi.nlm.nih.gov/pubmed/31959768 http://dx.doi.org/10.1038/s41597-020-0360-7 |
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author | Deng, Lijie Lyu, Junyan Huang, Haixiang Deng, Yuqing Yuan, Jin Tang, Xiaoying |
author_facet | Deng, Lijie Lyu, Junyan Huang, Haixiang Deng, Yuqing Yuan, Jin Tang, Xiaoying |
author_sort | Deng, Lijie |
collection | PubMed |
description | Corneal ulcer is a common ophthalmic symptom. Segmentation algorithms are needed to identify and quantify corneal ulcers from ocular staining images. Developments of such algorithms have been obstructed by a lack of high quality datasets (the ocular staining images and the corresponding gold-standard ulcer segmentation labels), especially for supervised learning based segmentation algorithms. In such context, we prepare a dataset containing 712 ocular staining images and the associated segmentation labels of flaky corneal ulcers. In addition to segmentation labels for flaky corneal ulcers, we also provide each image with three-fold class labels: firstly, each image has a label in terms of its general ulcer pattern; secondly, each image has a label in terms of its specific ulcer pattern; thirdly, each image has a label indicating its ulcer severity degree. This dataset not only provides an excellent opportunity for investigating the accuracy and reliability of different segmentation and classification algorithms for corneal ulcers, but also advances the development of new supervised learning based algorithms especially those in the deep learning framework. |
format | Online Article Text |
id | pubmed-6971241 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-69712412020-01-28 The SUSTech-SYSU dataset for automatically segmenting and classifying corneal ulcers Deng, Lijie Lyu, Junyan Huang, Haixiang Deng, Yuqing Yuan, Jin Tang, Xiaoying Sci Data Data Descriptor Corneal ulcer is a common ophthalmic symptom. Segmentation algorithms are needed to identify and quantify corneal ulcers from ocular staining images. Developments of such algorithms have been obstructed by a lack of high quality datasets (the ocular staining images and the corresponding gold-standard ulcer segmentation labels), especially for supervised learning based segmentation algorithms. In such context, we prepare a dataset containing 712 ocular staining images and the associated segmentation labels of flaky corneal ulcers. In addition to segmentation labels for flaky corneal ulcers, we also provide each image with three-fold class labels: firstly, each image has a label in terms of its general ulcer pattern; secondly, each image has a label in terms of its specific ulcer pattern; thirdly, each image has a label indicating its ulcer severity degree. This dataset not only provides an excellent opportunity for investigating the accuracy and reliability of different segmentation and classification algorithms for corneal ulcers, but also advances the development of new supervised learning based algorithms especially those in the deep learning framework. Nature Publishing Group UK 2020-01-20 /pmc/articles/PMC6971241/ /pubmed/31959768 http://dx.doi.org/10.1038/s41597-020-0360-7 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver http://creativecommons.org/publicdomain/zero/1.0/ applies to the metadata files associated with this article. |
spellingShingle | Data Descriptor Deng, Lijie Lyu, Junyan Huang, Haixiang Deng, Yuqing Yuan, Jin Tang, Xiaoying The SUSTech-SYSU dataset for automatically segmenting and classifying corneal ulcers |
title | The SUSTech-SYSU dataset for automatically segmenting and classifying corneal ulcers |
title_full | The SUSTech-SYSU dataset for automatically segmenting and classifying corneal ulcers |
title_fullStr | The SUSTech-SYSU dataset for automatically segmenting and classifying corneal ulcers |
title_full_unstemmed | The SUSTech-SYSU dataset for automatically segmenting and classifying corneal ulcers |
title_short | The SUSTech-SYSU dataset for automatically segmenting and classifying corneal ulcers |
title_sort | sustech-sysu dataset for automatically segmenting and classifying corneal ulcers |
topic | Data Descriptor |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6971241/ https://www.ncbi.nlm.nih.gov/pubmed/31959768 http://dx.doi.org/10.1038/s41597-020-0360-7 |
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