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Comprehensive transcriptome data for endemic Schizothoracinae fish in the Tibetan Plateau

The Schizothoracinae fishes, endemic species in the Tibetan Plateau, are considered as ideal models for highland adaptation and speciation investigation. Despite several transcriptome studies for highland fishes have been reported before, the transcriptome information of Schizothoracinae is still la...

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Autores principales: Zhou, Chaowei, Xiao, Shijun, Liu, Yanchao, Mou, Zhenbo, Zhou, Jianshe, Pan, Yingzi, Zhang, Chi, Wang, Jiu, Deng, Xingxing, Zou, Ming, Liu, Haiping
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6972879/
https://www.ncbi.nlm.nih.gov/pubmed/31964888
http://dx.doi.org/10.1038/s41597-020-0361-6
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author Zhou, Chaowei
Xiao, Shijun
Liu, Yanchao
Mou, Zhenbo
Zhou, Jianshe
Pan, Yingzi
Zhang, Chi
Wang, Jiu
Deng, Xingxing
Zou, Ming
Liu, Haiping
author_facet Zhou, Chaowei
Xiao, Shijun
Liu, Yanchao
Mou, Zhenbo
Zhou, Jianshe
Pan, Yingzi
Zhang, Chi
Wang, Jiu
Deng, Xingxing
Zou, Ming
Liu, Haiping
author_sort Zhou, Chaowei
collection PubMed
description The Schizothoracinae fishes, endemic species in the Tibetan Plateau, are considered as ideal models for highland adaptation and speciation investigation. Despite several transcriptome studies for highland fishes have been reported before, the transcriptome information of Schizothoracinae is still lacking. To obtain comprehensive transcriptome data for Schizothoracinae, the transcriptome of a total of 183 samples from 14 representative Schizothoracinae species, were sequenced and de novo assembled. As a result, about 1,363 Gb transcriptome clean data was obtained. After the assembly, we obtain 76,602–154,860 unigenes for each species with sequence N50 length of 1,564–2,143 bp. More than half of the unigenes were functionally annotated by public databases. The Schizothoracinae fishes in this work exhibited diversified ecological distributions, phenotype characters and feeding habits; therefore, the comprehensive transcriptome data of those species provided valuable information for the environmental adaptation and speciation of Schizothoracinae in the Tibetan Plateau.
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spelling pubmed-69728792020-01-28 Comprehensive transcriptome data for endemic Schizothoracinae fish in the Tibetan Plateau Zhou, Chaowei Xiao, Shijun Liu, Yanchao Mou, Zhenbo Zhou, Jianshe Pan, Yingzi Zhang, Chi Wang, Jiu Deng, Xingxing Zou, Ming Liu, Haiping Sci Data Data Descriptor The Schizothoracinae fishes, endemic species in the Tibetan Plateau, are considered as ideal models for highland adaptation and speciation investigation. Despite several transcriptome studies for highland fishes have been reported before, the transcriptome information of Schizothoracinae is still lacking. To obtain comprehensive transcriptome data for Schizothoracinae, the transcriptome of a total of 183 samples from 14 representative Schizothoracinae species, were sequenced and de novo assembled. As a result, about 1,363 Gb transcriptome clean data was obtained. After the assembly, we obtain 76,602–154,860 unigenes for each species with sequence N50 length of 1,564–2,143 bp. More than half of the unigenes were functionally annotated by public databases. The Schizothoracinae fishes in this work exhibited diversified ecological distributions, phenotype characters and feeding habits; therefore, the comprehensive transcriptome data of those species provided valuable information for the environmental adaptation and speciation of Schizothoracinae in the Tibetan Plateau. Nature Publishing Group UK 2020-01-21 /pmc/articles/PMC6972879/ /pubmed/31964888 http://dx.doi.org/10.1038/s41597-020-0361-6 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver http://creativecommons.org/publicdomain/zero/1.0/ applies to the metadata files associated with this article.
spellingShingle Data Descriptor
Zhou, Chaowei
Xiao, Shijun
Liu, Yanchao
Mou, Zhenbo
Zhou, Jianshe
Pan, Yingzi
Zhang, Chi
Wang, Jiu
Deng, Xingxing
Zou, Ming
Liu, Haiping
Comprehensive transcriptome data for endemic Schizothoracinae fish in the Tibetan Plateau
title Comprehensive transcriptome data for endemic Schizothoracinae fish in the Tibetan Plateau
title_full Comprehensive transcriptome data for endemic Schizothoracinae fish in the Tibetan Plateau
title_fullStr Comprehensive transcriptome data for endemic Schizothoracinae fish in the Tibetan Plateau
title_full_unstemmed Comprehensive transcriptome data for endemic Schizothoracinae fish in the Tibetan Plateau
title_short Comprehensive transcriptome data for endemic Schizothoracinae fish in the Tibetan Plateau
title_sort comprehensive transcriptome data for endemic schizothoracinae fish in the tibetan plateau
topic Data Descriptor
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6972879/
https://www.ncbi.nlm.nih.gov/pubmed/31964888
http://dx.doi.org/10.1038/s41597-020-0361-6
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