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The Parkinson's Disease Mendelian Randomization Research Portal

BACKGROUND: Mendelian randomization is a method for exploring observational associations to find evidence of causality. OBJECTIVE: To apply Mendelian randomization between risk factors/phenotypic traits (exposures) and PD in a large, unbiased manner, and to create a public resource for research. MET...

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Autores principales: Noyce, Alastair J., Bandres‐Ciga, Sara, Kim, Jonggeol, Heilbron, Karl, Kia, Demis, Hemani, Gibran, Xue, Angli, Lawlor, Debbie A., Smith, George Davey, Duran, Raquel, Gan‐Or, Ziv, Blauwendraat, Cornelis, Gibbs, J. Raphael, Hinds, David A., Yang, Jian, Visscher, Peter, Cuzick, Jack, Morris, Huw, Hardy, John, Wood, Nicholas W., Nalls, Mike A., Singleton, Andrew B.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley & Sons, Inc. 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6973052/
https://www.ncbi.nlm.nih.gov/pubmed/31659794
http://dx.doi.org/10.1002/mds.27873
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author Noyce, Alastair J.
Bandres‐Ciga, Sara
Kim, Jonggeol
Heilbron, Karl
Kia, Demis
Hemani, Gibran
Xue, Angli
Lawlor, Debbie A.
Smith, George Davey
Duran, Raquel
Gan‐Or, Ziv
Blauwendraat, Cornelis
Gibbs, J. Raphael
Hinds, David A.
Yang, Jian
Visscher, Peter
Cuzick, Jack
Morris, Huw
Hardy, John
Wood, Nicholas W.
Nalls, Mike A.
Singleton, Andrew B.
author_facet Noyce, Alastair J.
Bandres‐Ciga, Sara
Kim, Jonggeol
Heilbron, Karl
Kia, Demis
Hemani, Gibran
Xue, Angli
Lawlor, Debbie A.
Smith, George Davey
Duran, Raquel
Gan‐Or, Ziv
Blauwendraat, Cornelis
Gibbs, J. Raphael
Hinds, David A.
Yang, Jian
Visscher, Peter
Cuzick, Jack
Morris, Huw
Hardy, John
Wood, Nicholas W.
Nalls, Mike A.
Singleton, Andrew B.
author_sort Noyce, Alastair J.
collection PubMed
description BACKGROUND: Mendelian randomization is a method for exploring observational associations to find evidence of causality. OBJECTIVE: To apply Mendelian randomization between risk factors/phenotypic traits (exposures) and PD in a large, unbiased manner, and to create a public resource for research. METHODS: We used two‐sample Mendelian randomization in which the summary statistics relating to single‐nucleotide polymorphisms from 5,839 genome‐wide association studies of exposures were used to assess causal relationships with PD. We selected the highest‐quality exposure genome‐wide association studies for this report (n = 401). For the disease outcome, summary statistics from the largest published PD genome‐wide association studies were used. For each exposure, the causal effect on PD was assessed using the inverse variance weighted method, followed by a range of sensitivity analyses. We used a false discovery rate of 5% from the inverse variance weighted analysis to prioritize exposures of interest. RESULTS: We observed evidence for causal associations between 12 exposures and risk of PD. Of these, nine were effects related to increasing adiposity and decreasing risk of PD. The remaining top three exposures that affected PD risk were tea drinking, time spent watching television, and forced vital capacity, but these may have been biased and were less convincing. Other exposures at nominal statistical significance included inverse effects of smoking and alcohol. CONCLUSIONS: We present a new platform which offers Mendelian randomization analyses for a total of 5,839 genome‐wide association studies versus the largest PD genome‐wide association studies available (https://pdgenetics.shinyapps.io/MRportal/). Alongside, we report further evidence to support a causal role for adiposity on lowering the risk of PD. © 2019 The Authors. Movement Disorders published by Wiley Periodicals, Inc. on behalf of International Parkinson and Movement Disorder Society.
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spelling pubmed-69730522020-01-27 The Parkinson's Disease Mendelian Randomization Research Portal Noyce, Alastair J. Bandres‐Ciga, Sara Kim, Jonggeol Heilbron, Karl Kia, Demis Hemani, Gibran Xue, Angli Lawlor, Debbie A. Smith, George Davey Duran, Raquel Gan‐Or, Ziv Blauwendraat, Cornelis Gibbs, J. Raphael Hinds, David A. Yang, Jian Visscher, Peter Cuzick, Jack Morris, Huw Hardy, John Wood, Nicholas W. Nalls, Mike A. Singleton, Andrew B. Mov Disord Research Articles BACKGROUND: Mendelian randomization is a method for exploring observational associations to find evidence of causality. OBJECTIVE: To apply Mendelian randomization between risk factors/phenotypic traits (exposures) and PD in a large, unbiased manner, and to create a public resource for research. METHODS: We used two‐sample Mendelian randomization in which the summary statistics relating to single‐nucleotide polymorphisms from 5,839 genome‐wide association studies of exposures were used to assess causal relationships with PD. We selected the highest‐quality exposure genome‐wide association studies for this report (n = 401). For the disease outcome, summary statistics from the largest published PD genome‐wide association studies were used. For each exposure, the causal effect on PD was assessed using the inverse variance weighted method, followed by a range of sensitivity analyses. We used a false discovery rate of 5% from the inverse variance weighted analysis to prioritize exposures of interest. RESULTS: We observed evidence for causal associations between 12 exposures and risk of PD. Of these, nine were effects related to increasing adiposity and decreasing risk of PD. The remaining top three exposures that affected PD risk were tea drinking, time spent watching television, and forced vital capacity, but these may have been biased and were less convincing. Other exposures at nominal statistical significance included inverse effects of smoking and alcohol. CONCLUSIONS: We present a new platform which offers Mendelian randomization analyses for a total of 5,839 genome‐wide association studies versus the largest PD genome‐wide association studies available (https://pdgenetics.shinyapps.io/MRportal/). Alongside, we report further evidence to support a causal role for adiposity on lowering the risk of PD. © 2019 The Authors. Movement Disorders published by Wiley Periodicals, Inc. on behalf of International Parkinson and Movement Disorder Society. John Wiley & Sons, Inc. 2019-10-28 2019-12 /pmc/articles/PMC6973052/ /pubmed/31659794 http://dx.doi.org/10.1002/mds.27873 Text en © 2019 The Authors. Movement Disorders published by Wiley Periodicals, Inc. on behalf of International Parkinson and Movement Disorder Society. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Articles
Noyce, Alastair J.
Bandres‐Ciga, Sara
Kim, Jonggeol
Heilbron, Karl
Kia, Demis
Hemani, Gibran
Xue, Angli
Lawlor, Debbie A.
Smith, George Davey
Duran, Raquel
Gan‐Or, Ziv
Blauwendraat, Cornelis
Gibbs, J. Raphael
Hinds, David A.
Yang, Jian
Visscher, Peter
Cuzick, Jack
Morris, Huw
Hardy, John
Wood, Nicholas W.
Nalls, Mike A.
Singleton, Andrew B.
The Parkinson's Disease Mendelian Randomization Research Portal
title The Parkinson's Disease Mendelian Randomization Research Portal
title_full The Parkinson's Disease Mendelian Randomization Research Portal
title_fullStr The Parkinson's Disease Mendelian Randomization Research Portal
title_full_unstemmed The Parkinson's Disease Mendelian Randomization Research Portal
title_short The Parkinson's Disease Mendelian Randomization Research Portal
title_sort parkinson's disease mendelian randomization research portal
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6973052/
https://www.ncbi.nlm.nih.gov/pubmed/31659794
http://dx.doi.org/10.1002/mds.27873
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