Cargando…
The Parkinson's Disease Mendelian Randomization Research Portal
BACKGROUND: Mendelian randomization is a method for exploring observational associations to find evidence of causality. OBJECTIVE: To apply Mendelian randomization between risk factors/phenotypic traits (exposures) and PD in a large, unbiased manner, and to create a public resource for research. MET...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley & Sons, Inc.
2019
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6973052/ https://www.ncbi.nlm.nih.gov/pubmed/31659794 http://dx.doi.org/10.1002/mds.27873 |
_version_ | 1783489964842942464 |
---|---|
author | Noyce, Alastair J. Bandres‐Ciga, Sara Kim, Jonggeol Heilbron, Karl Kia, Demis Hemani, Gibran Xue, Angli Lawlor, Debbie A. Smith, George Davey Duran, Raquel Gan‐Or, Ziv Blauwendraat, Cornelis Gibbs, J. Raphael Hinds, David A. Yang, Jian Visscher, Peter Cuzick, Jack Morris, Huw Hardy, John Wood, Nicholas W. Nalls, Mike A. Singleton, Andrew B. |
author_facet | Noyce, Alastair J. Bandres‐Ciga, Sara Kim, Jonggeol Heilbron, Karl Kia, Demis Hemani, Gibran Xue, Angli Lawlor, Debbie A. Smith, George Davey Duran, Raquel Gan‐Or, Ziv Blauwendraat, Cornelis Gibbs, J. Raphael Hinds, David A. Yang, Jian Visscher, Peter Cuzick, Jack Morris, Huw Hardy, John Wood, Nicholas W. Nalls, Mike A. Singleton, Andrew B. |
author_sort | Noyce, Alastair J. |
collection | PubMed |
description | BACKGROUND: Mendelian randomization is a method for exploring observational associations to find evidence of causality. OBJECTIVE: To apply Mendelian randomization between risk factors/phenotypic traits (exposures) and PD in a large, unbiased manner, and to create a public resource for research. METHODS: We used two‐sample Mendelian randomization in which the summary statistics relating to single‐nucleotide polymorphisms from 5,839 genome‐wide association studies of exposures were used to assess causal relationships with PD. We selected the highest‐quality exposure genome‐wide association studies for this report (n = 401). For the disease outcome, summary statistics from the largest published PD genome‐wide association studies were used. For each exposure, the causal effect on PD was assessed using the inverse variance weighted method, followed by a range of sensitivity analyses. We used a false discovery rate of 5% from the inverse variance weighted analysis to prioritize exposures of interest. RESULTS: We observed evidence for causal associations between 12 exposures and risk of PD. Of these, nine were effects related to increasing adiposity and decreasing risk of PD. The remaining top three exposures that affected PD risk were tea drinking, time spent watching television, and forced vital capacity, but these may have been biased and were less convincing. Other exposures at nominal statistical significance included inverse effects of smoking and alcohol. CONCLUSIONS: We present a new platform which offers Mendelian randomization analyses for a total of 5,839 genome‐wide association studies versus the largest PD genome‐wide association studies available (https://pdgenetics.shinyapps.io/MRportal/). Alongside, we report further evidence to support a causal role for adiposity on lowering the risk of PD. © 2019 The Authors. Movement Disorders published by Wiley Periodicals, Inc. on behalf of International Parkinson and Movement Disorder Society. |
format | Online Article Text |
id | pubmed-6973052 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | John Wiley & Sons, Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-69730522020-01-27 The Parkinson's Disease Mendelian Randomization Research Portal Noyce, Alastair J. Bandres‐Ciga, Sara Kim, Jonggeol Heilbron, Karl Kia, Demis Hemani, Gibran Xue, Angli Lawlor, Debbie A. Smith, George Davey Duran, Raquel Gan‐Or, Ziv Blauwendraat, Cornelis Gibbs, J. Raphael Hinds, David A. Yang, Jian Visscher, Peter Cuzick, Jack Morris, Huw Hardy, John Wood, Nicholas W. Nalls, Mike A. Singleton, Andrew B. Mov Disord Research Articles BACKGROUND: Mendelian randomization is a method for exploring observational associations to find evidence of causality. OBJECTIVE: To apply Mendelian randomization between risk factors/phenotypic traits (exposures) and PD in a large, unbiased manner, and to create a public resource for research. METHODS: We used two‐sample Mendelian randomization in which the summary statistics relating to single‐nucleotide polymorphisms from 5,839 genome‐wide association studies of exposures were used to assess causal relationships with PD. We selected the highest‐quality exposure genome‐wide association studies for this report (n = 401). For the disease outcome, summary statistics from the largest published PD genome‐wide association studies were used. For each exposure, the causal effect on PD was assessed using the inverse variance weighted method, followed by a range of sensitivity analyses. We used a false discovery rate of 5% from the inverse variance weighted analysis to prioritize exposures of interest. RESULTS: We observed evidence for causal associations between 12 exposures and risk of PD. Of these, nine were effects related to increasing adiposity and decreasing risk of PD. The remaining top three exposures that affected PD risk were tea drinking, time spent watching television, and forced vital capacity, but these may have been biased and were less convincing. Other exposures at nominal statistical significance included inverse effects of smoking and alcohol. CONCLUSIONS: We present a new platform which offers Mendelian randomization analyses for a total of 5,839 genome‐wide association studies versus the largest PD genome‐wide association studies available (https://pdgenetics.shinyapps.io/MRportal/). Alongside, we report further evidence to support a causal role for adiposity on lowering the risk of PD. © 2019 The Authors. Movement Disorders published by Wiley Periodicals, Inc. on behalf of International Parkinson and Movement Disorder Society. John Wiley & Sons, Inc. 2019-10-28 2019-12 /pmc/articles/PMC6973052/ /pubmed/31659794 http://dx.doi.org/10.1002/mds.27873 Text en © 2019 The Authors. Movement Disorders published by Wiley Periodicals, Inc. on behalf of International Parkinson and Movement Disorder Society. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Articles Noyce, Alastair J. Bandres‐Ciga, Sara Kim, Jonggeol Heilbron, Karl Kia, Demis Hemani, Gibran Xue, Angli Lawlor, Debbie A. Smith, George Davey Duran, Raquel Gan‐Or, Ziv Blauwendraat, Cornelis Gibbs, J. Raphael Hinds, David A. Yang, Jian Visscher, Peter Cuzick, Jack Morris, Huw Hardy, John Wood, Nicholas W. Nalls, Mike A. Singleton, Andrew B. The Parkinson's Disease Mendelian Randomization Research Portal |
title | The Parkinson's Disease Mendelian Randomization Research Portal |
title_full | The Parkinson's Disease Mendelian Randomization Research Portal |
title_fullStr | The Parkinson's Disease Mendelian Randomization Research Portal |
title_full_unstemmed | The Parkinson's Disease Mendelian Randomization Research Portal |
title_short | The Parkinson's Disease Mendelian Randomization Research Portal |
title_sort | parkinson's disease mendelian randomization research portal |
topic | Research Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6973052/ https://www.ncbi.nlm.nih.gov/pubmed/31659794 http://dx.doi.org/10.1002/mds.27873 |
work_keys_str_mv | AT noycealastairj theparkinsonsdiseasemendelianrandomizationresearchportal AT bandrescigasara theparkinsonsdiseasemendelianrandomizationresearchportal AT kimjonggeol theparkinsonsdiseasemendelianrandomizationresearchportal AT heilbronkarl theparkinsonsdiseasemendelianrandomizationresearchportal AT kiademis theparkinsonsdiseasemendelianrandomizationresearchportal AT hemanigibran theparkinsonsdiseasemendelianrandomizationresearchportal AT xueangli theparkinsonsdiseasemendelianrandomizationresearchportal AT lawlordebbiea theparkinsonsdiseasemendelianrandomizationresearchportal AT smithgeorgedavey theparkinsonsdiseasemendelianrandomizationresearchportal AT duranraquel theparkinsonsdiseasemendelianrandomizationresearchportal AT ganorziv theparkinsonsdiseasemendelianrandomizationresearchportal AT blauwendraatcornelis theparkinsonsdiseasemendelianrandomizationresearchportal AT gibbsjraphael theparkinsonsdiseasemendelianrandomizationresearchportal AT theparkinsonsdiseasemendelianrandomizationresearchportal AT hindsdavida theparkinsonsdiseasemendelianrandomizationresearchportal AT yangjian theparkinsonsdiseasemendelianrandomizationresearchportal AT visscherpeter theparkinsonsdiseasemendelianrandomizationresearchportal AT cuzickjack theparkinsonsdiseasemendelianrandomizationresearchportal AT morrishuw theparkinsonsdiseasemendelianrandomizationresearchportal AT hardyjohn theparkinsonsdiseasemendelianrandomizationresearchportal AT woodnicholasw theparkinsonsdiseasemendelianrandomizationresearchportal AT nallsmikea theparkinsonsdiseasemendelianrandomizationresearchportal AT singletonandrewb theparkinsonsdiseasemendelianrandomizationresearchportal AT noycealastairj parkinsonsdiseasemendelianrandomizationresearchportal AT bandrescigasara parkinsonsdiseasemendelianrandomizationresearchportal AT kimjonggeol parkinsonsdiseasemendelianrandomizationresearchportal AT heilbronkarl parkinsonsdiseasemendelianrandomizationresearchportal AT kiademis parkinsonsdiseasemendelianrandomizationresearchportal AT hemanigibran parkinsonsdiseasemendelianrandomizationresearchportal AT xueangli parkinsonsdiseasemendelianrandomizationresearchportal AT lawlordebbiea parkinsonsdiseasemendelianrandomizationresearchportal AT smithgeorgedavey parkinsonsdiseasemendelianrandomizationresearchportal AT duranraquel parkinsonsdiseasemendelianrandomizationresearchportal AT ganorziv parkinsonsdiseasemendelianrandomizationresearchportal AT blauwendraatcornelis parkinsonsdiseasemendelianrandomizationresearchportal AT gibbsjraphael parkinsonsdiseasemendelianrandomizationresearchportal AT parkinsonsdiseasemendelianrandomizationresearchportal AT hindsdavida parkinsonsdiseasemendelianrandomizationresearchportal AT yangjian parkinsonsdiseasemendelianrandomizationresearchportal AT visscherpeter parkinsonsdiseasemendelianrandomizationresearchportal AT cuzickjack parkinsonsdiseasemendelianrandomizationresearchportal AT morrishuw parkinsonsdiseasemendelianrandomizationresearchportal AT hardyjohn parkinsonsdiseasemendelianrandomizationresearchportal AT woodnicholasw parkinsonsdiseasemendelianrandomizationresearchportal AT nallsmikea parkinsonsdiseasemendelianrandomizationresearchportal AT singletonandrewb parkinsonsdiseasemendelianrandomizationresearchportal |