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Drivers of the composition of active rhizosphere bacterial communities in temperate grasslands

The active bacterial rhizobiomes and root exudate profiles of phytometers of six plant species growing in central European temperate grassland communities were investigated in three regions located up to 700 km apart, across diverse edaphic conditions and along a strong land use gradient. The recrui...

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Autores principales: Vieira, Selma, Sikorski, Johannes, Dietz, Sophie, Herz, Katharina, Schrumpf, Marion, Bruelheide, Helge, Scheel, Dierk, Friedrich, Michael W., Overmann, Jörg
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6976627/
https://www.ncbi.nlm.nih.gov/pubmed/31659233
http://dx.doi.org/10.1038/s41396-019-0543-4
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author Vieira, Selma
Sikorski, Johannes
Dietz, Sophie
Herz, Katharina
Schrumpf, Marion
Bruelheide, Helge
Scheel, Dierk
Friedrich, Michael W.
Overmann, Jörg
author_facet Vieira, Selma
Sikorski, Johannes
Dietz, Sophie
Herz, Katharina
Schrumpf, Marion
Bruelheide, Helge
Scheel, Dierk
Friedrich, Michael W.
Overmann, Jörg
author_sort Vieira, Selma
collection PubMed
description The active bacterial rhizobiomes and root exudate profiles of phytometers of six plant species growing in central European temperate grassland communities were investigated in three regions located up to 700 km apart, across diverse edaphic conditions and along a strong land use gradient. The recruitment process from bulk soil communities was identified as the major direct driver of the composition of active rhizosphere bacterial communities. Unexpectedly, the effect of soil properties, particularly soil texture, water content, and soil type, strongly dominated over plant properties and the composition of polar root exudates of the primary metabolism. While plant species-specific selection of bacteria was minor, the RNA-based composition of active rhizosphere bacteria substantially differed between rhizosphere and bulk soil. Although other variables could additionally be responsible for the consistent enrichment of particular bacteria in the rhizosphere, distinct bacterial OTUs were linked to the presence of specific polar root exudates independent of individual plant species. Our study also identified numerous previously unknown taxa that are correlated with rhizosphere dynamics and hence represent suitable targets for future manipulations of the plant rhizobiome.
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spelling pubmed-69766272020-01-23 Drivers of the composition of active rhizosphere bacterial communities in temperate grasslands Vieira, Selma Sikorski, Johannes Dietz, Sophie Herz, Katharina Schrumpf, Marion Bruelheide, Helge Scheel, Dierk Friedrich, Michael W. Overmann, Jörg ISME J Article The active bacterial rhizobiomes and root exudate profiles of phytometers of six plant species growing in central European temperate grassland communities were investigated in three regions located up to 700 km apart, across diverse edaphic conditions and along a strong land use gradient. The recruitment process from bulk soil communities was identified as the major direct driver of the composition of active rhizosphere bacterial communities. Unexpectedly, the effect of soil properties, particularly soil texture, water content, and soil type, strongly dominated over plant properties and the composition of polar root exudates of the primary metabolism. While plant species-specific selection of bacteria was minor, the RNA-based composition of active rhizosphere bacteria substantially differed between rhizosphere and bulk soil. Although other variables could additionally be responsible for the consistent enrichment of particular bacteria in the rhizosphere, distinct bacterial OTUs were linked to the presence of specific polar root exudates independent of individual plant species. Our study also identified numerous previously unknown taxa that are correlated with rhizosphere dynamics and hence represent suitable targets for future manipulations of the plant rhizobiome. Nature Publishing Group UK 2019-10-28 2020-02 /pmc/articles/PMC6976627/ /pubmed/31659233 http://dx.doi.org/10.1038/s41396-019-0543-4 Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Vieira, Selma
Sikorski, Johannes
Dietz, Sophie
Herz, Katharina
Schrumpf, Marion
Bruelheide, Helge
Scheel, Dierk
Friedrich, Michael W.
Overmann, Jörg
Drivers of the composition of active rhizosphere bacterial communities in temperate grasslands
title Drivers of the composition of active rhizosphere bacterial communities in temperate grasslands
title_full Drivers of the composition of active rhizosphere bacterial communities in temperate grasslands
title_fullStr Drivers of the composition of active rhizosphere bacterial communities in temperate grasslands
title_full_unstemmed Drivers of the composition of active rhizosphere bacterial communities in temperate grasslands
title_short Drivers of the composition of active rhizosphere bacterial communities in temperate grasslands
title_sort drivers of the composition of active rhizosphere bacterial communities in temperate grasslands
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6976627/
https://www.ncbi.nlm.nih.gov/pubmed/31659233
http://dx.doi.org/10.1038/s41396-019-0543-4
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