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Development of 18 microsatellite markers for Salvia pratensis

PREMISE: Microsatellite markers were developed for the perennial herb Salvia pratensis (Lamiaceae), a species representative of European dry grasslands. The development of microsatellite markers is needed for genetic and phylogeographical studies of species from the genus Salvia. METHODS AND RESULTS...

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Autores principales: Krak, Karol, Vít, Petr, Douda, Jan, Mandák, Bohumil
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6976894/
https://www.ncbi.nlm.nih.gov/pubmed/31993258
http://dx.doi.org/10.1002/aps3.11316
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author Krak, Karol
Vít, Petr
Douda, Jan
Mandák, Bohumil
author_facet Krak, Karol
Vít, Petr
Douda, Jan
Mandák, Bohumil
author_sort Krak, Karol
collection PubMed
description PREMISE: Microsatellite markers were developed for the perennial herb Salvia pratensis (Lamiaceae), a species representative of European dry grasslands. The development of microsatellite markers is needed for genetic and phylogeographical studies of species from the genus Salvia. METHODS AND RESULTS: We used low‐coverage Illumina sequencing to identify microsatellite loci. Based on these data, we have developed 18 polymorphic microsatellite markers with the number of alleles per locus ranging from two to 15. The levels of observed and expected heterozygosity ranged from 0.05 to 0.95 and from 0.05 to 0.89, respectively. The majority of the markers successfully cross‐amplified in other Salvia species. CONCLUSIONS: The markers were shown to be suitable for population genetic and phylogeographic studies in S. pratensis as well as in related species (S. aethiopis, S. austriaca, S. glutinosa, S. nemorosa, S. nutans, and S. verticillata) and will be used in the broader context to trace the origins of European dry grasslands.
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spelling pubmed-69768942020-01-28 Development of 18 microsatellite markers for Salvia pratensis Krak, Karol Vít, Petr Douda, Jan Mandák, Bohumil Appl Plant Sci Primer Notes PREMISE: Microsatellite markers were developed for the perennial herb Salvia pratensis (Lamiaceae), a species representative of European dry grasslands. The development of microsatellite markers is needed for genetic and phylogeographical studies of species from the genus Salvia. METHODS AND RESULTS: We used low‐coverage Illumina sequencing to identify microsatellite loci. Based on these data, we have developed 18 polymorphic microsatellite markers with the number of alleles per locus ranging from two to 15. The levels of observed and expected heterozygosity ranged from 0.05 to 0.95 and from 0.05 to 0.89, respectively. The majority of the markers successfully cross‐amplified in other Salvia species. CONCLUSIONS: The markers were shown to be suitable for population genetic and phylogeographic studies in S. pratensis as well as in related species (S. aethiopis, S. austriaca, S. glutinosa, S. nemorosa, S. nutans, and S. verticillata) and will be used in the broader context to trace the origins of European dry grasslands. John Wiley and Sons Inc. 2020-01-22 /pmc/articles/PMC6976894/ /pubmed/31993258 http://dx.doi.org/10.1002/aps3.11316 Text en © 2020 Krak et al. Applications in Plant Sciences is published by Wiley Periodicals, Inc. on behalf of the Botanical Society of America This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Primer Notes
Krak, Karol
Vít, Petr
Douda, Jan
Mandák, Bohumil
Development of 18 microsatellite markers for Salvia pratensis
title Development of 18 microsatellite markers for Salvia pratensis
title_full Development of 18 microsatellite markers for Salvia pratensis
title_fullStr Development of 18 microsatellite markers for Salvia pratensis
title_full_unstemmed Development of 18 microsatellite markers for Salvia pratensis
title_short Development of 18 microsatellite markers for Salvia pratensis
title_sort development of 18 microsatellite markers for salvia pratensis
topic Primer Notes
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6976894/
https://www.ncbi.nlm.nih.gov/pubmed/31993258
http://dx.doi.org/10.1002/aps3.11316
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