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Development and validation of T‐ARMS‐PCR to detect CYP2C19*17 allele
BACKGROUND: CYP2C19*17 (rs12248560) is a functional single nucleotide polymorphism (SNP) in the CYP2C19 gene. It has been shown that CYP2C19*17 is associated with the clinical outcome of some drugs metabolized by CYP2C19 and a decreased risk of some diseases. The aim of this study was to develop a r...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6977150/ https://www.ncbi.nlm.nih.gov/pubmed/31441095 http://dx.doi.org/10.1002/jcla.23005 |
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author | Jin, Chenxi Li, Zhikun Zheng, Xiaodi Shen, Kailin Chao, Jiashuo Dong, Yifei Huang, Qin Yin, Qiulin Deng, Yan Zhu, Weifeng |
author_facet | Jin, Chenxi Li, Zhikun Zheng, Xiaodi Shen, Kailin Chao, Jiashuo Dong, Yifei Huang, Qin Yin, Qiulin Deng, Yan Zhu, Weifeng |
author_sort | Jin, Chenxi |
collection | PubMed |
description | BACKGROUND: CYP2C19*17 (rs12248560) is a functional single nucleotide polymorphism (SNP) in the CYP2C19 gene. It has been shown that CYP2C19*17 is associated with the clinical outcome of some drugs metabolized by CYP2C19 and a decreased risk of some diseases. The aim of this study was to develop a reliable and simple method to detect this polymorphism. METHODS: Tetra‐primer amplification refractory mutation system‐polymerase chain reaction (T‐ARMS‐PCR) was used to detect the CYP2C19*17 polymorphism. A total of 93 samples were screened by this method, and the results of T‐ARMS‐PCR were validated by DNA sequencing. RESULTS: There were 91 samples with the CC genotype (97.8%) and two samples with the CT genotype (2.2%). The frequency of the C allele was 98.9%, and the frequency of the T allele was 1.1%. The DNA sequencing results were completely concordant with the T‐ARMS‐PCR results. CONCLUSION: T‐ARMS‐PCR can detect the CYP2C19*17 polymorphism with high accuracy, low costs, and a simple process. |
format | Online Article Text |
id | pubmed-6977150 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-69771502020-01-28 Development and validation of T‐ARMS‐PCR to detect CYP2C19*17 allele Jin, Chenxi Li, Zhikun Zheng, Xiaodi Shen, Kailin Chao, Jiashuo Dong, Yifei Huang, Qin Yin, Qiulin Deng, Yan Zhu, Weifeng J Clin Lab Anal Research Articles BACKGROUND: CYP2C19*17 (rs12248560) is a functional single nucleotide polymorphism (SNP) in the CYP2C19 gene. It has been shown that CYP2C19*17 is associated with the clinical outcome of some drugs metabolized by CYP2C19 and a decreased risk of some diseases. The aim of this study was to develop a reliable and simple method to detect this polymorphism. METHODS: Tetra‐primer amplification refractory mutation system‐polymerase chain reaction (T‐ARMS‐PCR) was used to detect the CYP2C19*17 polymorphism. A total of 93 samples were screened by this method, and the results of T‐ARMS‐PCR were validated by DNA sequencing. RESULTS: There were 91 samples with the CC genotype (97.8%) and two samples with the CT genotype (2.2%). The frequency of the C allele was 98.9%, and the frequency of the T allele was 1.1%. The DNA sequencing results were completely concordant with the T‐ARMS‐PCR results. CONCLUSION: T‐ARMS‐PCR can detect the CYP2C19*17 polymorphism with high accuracy, low costs, and a simple process. John Wiley and Sons Inc. 2019-08-22 /pmc/articles/PMC6977150/ /pubmed/31441095 http://dx.doi.org/10.1002/jcla.23005 Text en © 2019 The Authors. Journal of Clinical Laboratory Analysis published by Wiley Periodicals, Inc This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes. |
spellingShingle | Research Articles Jin, Chenxi Li, Zhikun Zheng, Xiaodi Shen, Kailin Chao, Jiashuo Dong, Yifei Huang, Qin Yin, Qiulin Deng, Yan Zhu, Weifeng Development and validation of T‐ARMS‐PCR to detect CYP2C19*17 allele |
title | Development and validation of T‐ARMS‐PCR to detect CYP2C19*17 allele |
title_full | Development and validation of T‐ARMS‐PCR to detect CYP2C19*17 allele |
title_fullStr | Development and validation of T‐ARMS‐PCR to detect CYP2C19*17 allele |
title_full_unstemmed | Development and validation of T‐ARMS‐PCR to detect CYP2C19*17 allele |
title_short | Development and validation of T‐ARMS‐PCR to detect CYP2C19*17 allele |
title_sort | development and validation of t‐arms‐pcr to detect cyp2c19*17 allele |
topic | Research Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6977150/ https://www.ncbi.nlm.nih.gov/pubmed/31441095 http://dx.doi.org/10.1002/jcla.23005 |
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