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Development and validation of T‐ARMS‐PCR to detect CYP2C19*17 allele

BACKGROUND: CYP2C19*17 (rs12248560) is a functional single nucleotide polymorphism (SNP) in the CYP2C19 gene. It has been shown that CYP2C19*17 is associated with the clinical outcome of some drugs metabolized by CYP2C19 and a decreased risk of some diseases. The aim of this study was to develop a r...

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Autores principales: Jin, Chenxi, Li, Zhikun, Zheng, Xiaodi, Shen, Kailin, Chao, Jiashuo, Dong, Yifei, Huang, Qin, Yin, Qiulin, Deng, Yan, Zhu, Weifeng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6977150/
https://www.ncbi.nlm.nih.gov/pubmed/31441095
http://dx.doi.org/10.1002/jcla.23005
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author Jin, Chenxi
Li, Zhikun
Zheng, Xiaodi
Shen, Kailin
Chao, Jiashuo
Dong, Yifei
Huang, Qin
Yin, Qiulin
Deng, Yan
Zhu, Weifeng
author_facet Jin, Chenxi
Li, Zhikun
Zheng, Xiaodi
Shen, Kailin
Chao, Jiashuo
Dong, Yifei
Huang, Qin
Yin, Qiulin
Deng, Yan
Zhu, Weifeng
author_sort Jin, Chenxi
collection PubMed
description BACKGROUND: CYP2C19*17 (rs12248560) is a functional single nucleotide polymorphism (SNP) in the CYP2C19 gene. It has been shown that CYP2C19*17 is associated with the clinical outcome of some drugs metabolized by CYP2C19 and a decreased risk of some diseases. The aim of this study was to develop a reliable and simple method to detect this polymorphism. METHODS: Tetra‐primer amplification refractory mutation system‐polymerase chain reaction (T‐ARMS‐PCR) was used to detect the CYP2C19*17 polymorphism. A total of 93 samples were screened by this method, and the results of T‐ARMS‐PCR were validated by DNA sequencing. RESULTS: There were 91 samples with the CC genotype (97.8%) and two samples with the CT genotype (2.2%). The frequency of the C allele was 98.9%, and the frequency of the T allele was 1.1%. The DNA sequencing results were completely concordant with the T‐ARMS‐PCR results. CONCLUSION: T‐ARMS‐PCR can detect the CYP2C19*17 polymorphism with high accuracy, low costs, and a simple process.
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spelling pubmed-69771502020-01-28 Development and validation of T‐ARMS‐PCR to detect CYP2C19*17 allele Jin, Chenxi Li, Zhikun Zheng, Xiaodi Shen, Kailin Chao, Jiashuo Dong, Yifei Huang, Qin Yin, Qiulin Deng, Yan Zhu, Weifeng J Clin Lab Anal Research Articles BACKGROUND: CYP2C19*17 (rs12248560) is a functional single nucleotide polymorphism (SNP) in the CYP2C19 gene. It has been shown that CYP2C19*17 is associated with the clinical outcome of some drugs metabolized by CYP2C19 and a decreased risk of some diseases. The aim of this study was to develop a reliable and simple method to detect this polymorphism. METHODS: Tetra‐primer amplification refractory mutation system‐polymerase chain reaction (T‐ARMS‐PCR) was used to detect the CYP2C19*17 polymorphism. A total of 93 samples were screened by this method, and the results of T‐ARMS‐PCR were validated by DNA sequencing. RESULTS: There were 91 samples with the CC genotype (97.8%) and two samples with the CT genotype (2.2%). The frequency of the C allele was 98.9%, and the frequency of the T allele was 1.1%. The DNA sequencing results were completely concordant with the T‐ARMS‐PCR results. CONCLUSION: T‐ARMS‐PCR can detect the CYP2C19*17 polymorphism with high accuracy, low costs, and a simple process. John Wiley and Sons Inc. 2019-08-22 /pmc/articles/PMC6977150/ /pubmed/31441095 http://dx.doi.org/10.1002/jcla.23005 Text en © 2019 The Authors. Journal of Clinical Laboratory Analysis published by Wiley Periodicals, Inc This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes.
spellingShingle Research Articles
Jin, Chenxi
Li, Zhikun
Zheng, Xiaodi
Shen, Kailin
Chao, Jiashuo
Dong, Yifei
Huang, Qin
Yin, Qiulin
Deng, Yan
Zhu, Weifeng
Development and validation of T‐ARMS‐PCR to detect CYP2C19*17 allele
title Development and validation of T‐ARMS‐PCR to detect CYP2C19*17 allele
title_full Development and validation of T‐ARMS‐PCR to detect CYP2C19*17 allele
title_fullStr Development and validation of T‐ARMS‐PCR to detect CYP2C19*17 allele
title_full_unstemmed Development and validation of T‐ARMS‐PCR to detect CYP2C19*17 allele
title_short Development and validation of T‐ARMS‐PCR to detect CYP2C19*17 allele
title_sort development and validation of t‐arms‐pcr to detect cyp2c19*17 allele
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6977150/
https://www.ncbi.nlm.nih.gov/pubmed/31441095
http://dx.doi.org/10.1002/jcla.23005
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