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Improvement of classification performance of Parkinson’s disease using shape features for machine learning on dopamine transporter single photon emission computed tomography

OBJECTIVE: To assess the classification performance between Parkinson’s disease (PD) and normal control (NC) when semi-quantitative indicators and shape features obtained on dopamine transporter (DAT) single photon emission computed tomography (SPECT) are combined as a feature of machine learning (M...

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Autores principales: Shiiba, Takuro, Arimura, Yuki, Nagano, Miku, Takahashi, Tenma, Takaki, Akihiro
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6980558/
https://www.ncbi.nlm.nih.gov/pubmed/31978154
http://dx.doi.org/10.1371/journal.pone.0228289
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author Shiiba, Takuro
Arimura, Yuki
Nagano, Miku
Takahashi, Tenma
Takaki, Akihiro
author_facet Shiiba, Takuro
Arimura, Yuki
Nagano, Miku
Takahashi, Tenma
Takaki, Akihiro
author_sort Shiiba, Takuro
collection PubMed
description OBJECTIVE: To assess the classification performance between Parkinson’s disease (PD) and normal control (NC) when semi-quantitative indicators and shape features obtained on dopamine transporter (DAT) single photon emission computed tomography (SPECT) are combined as a feature of machine learning (ML). METHODS: A total of 100 cases of both PD and normal control (NC) from the Parkinson’s Progression Markers Initiative database were evaluated. A summed image was generated and regions of interests were set to the left and right striata. Area, equivalent diameter, major axis length, minor axis length, perimeter and circularity were calculated as shape features. Striatum binding ratios (SBR(putamen) and SBR(caudate)) were used as comparison features. The classification performance of the PD and NC groups according to receiver operating characteristic analysis of the shape features was compared in terms of SBRs. Furthermore, we compared the classification performance of ML when shape features or SBRs were used alone and in combination. RESULTS: The shape features (except minor axis length) and SBRs indicated significant differences between the NC and PD groups (p < 0.05). The top five areas under the curves (AUC) were as follows: circularity (0.972), SBR(putamen) (0.972), major axis length (0.945), SBR(caudate) (0.928) and perimeter (0.896). When classification was done using ML, AUC was as follows: circularity and SBRs (0.995), circularity alone (0.990), and SBRs (0.973). The classification performance was significantly improved by combining SBRs and circularity than by SBRs alone (p = 0.018). CONCLUSION: We found that the circularity obtained from DAT-SPECT images could help in distinguishing NC and PD. Furthermore, the classification performance of ML was significantly improved using circularity in SBRs together.
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spelling pubmed-69805582020-02-04 Improvement of classification performance of Parkinson’s disease using shape features for machine learning on dopamine transporter single photon emission computed tomography Shiiba, Takuro Arimura, Yuki Nagano, Miku Takahashi, Tenma Takaki, Akihiro PLoS One Research Article OBJECTIVE: To assess the classification performance between Parkinson’s disease (PD) and normal control (NC) when semi-quantitative indicators and shape features obtained on dopamine transporter (DAT) single photon emission computed tomography (SPECT) are combined as a feature of machine learning (ML). METHODS: A total of 100 cases of both PD and normal control (NC) from the Parkinson’s Progression Markers Initiative database were evaluated. A summed image was generated and regions of interests were set to the left and right striata. Area, equivalent diameter, major axis length, minor axis length, perimeter and circularity were calculated as shape features. Striatum binding ratios (SBR(putamen) and SBR(caudate)) were used as comparison features. The classification performance of the PD and NC groups according to receiver operating characteristic analysis of the shape features was compared in terms of SBRs. Furthermore, we compared the classification performance of ML when shape features or SBRs were used alone and in combination. RESULTS: The shape features (except minor axis length) and SBRs indicated significant differences between the NC and PD groups (p < 0.05). The top five areas under the curves (AUC) were as follows: circularity (0.972), SBR(putamen) (0.972), major axis length (0.945), SBR(caudate) (0.928) and perimeter (0.896). When classification was done using ML, AUC was as follows: circularity and SBRs (0.995), circularity alone (0.990), and SBRs (0.973). The classification performance was significantly improved by combining SBRs and circularity than by SBRs alone (p = 0.018). CONCLUSION: We found that the circularity obtained from DAT-SPECT images could help in distinguishing NC and PD. Furthermore, the classification performance of ML was significantly improved using circularity in SBRs together. Public Library of Science 2020-01-24 /pmc/articles/PMC6980558/ /pubmed/31978154 http://dx.doi.org/10.1371/journal.pone.0228289 Text en © 2020 Shiiba et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Shiiba, Takuro
Arimura, Yuki
Nagano, Miku
Takahashi, Tenma
Takaki, Akihiro
Improvement of classification performance of Parkinson’s disease using shape features for machine learning on dopamine transporter single photon emission computed tomography
title Improvement of classification performance of Parkinson’s disease using shape features for machine learning on dopamine transporter single photon emission computed tomography
title_full Improvement of classification performance of Parkinson’s disease using shape features for machine learning on dopamine transporter single photon emission computed tomography
title_fullStr Improvement of classification performance of Parkinson’s disease using shape features for machine learning on dopamine transporter single photon emission computed tomography
title_full_unstemmed Improvement of classification performance of Parkinson’s disease using shape features for machine learning on dopamine transporter single photon emission computed tomography
title_short Improvement of classification performance of Parkinson’s disease using shape features for machine learning on dopamine transporter single photon emission computed tomography
title_sort improvement of classification performance of parkinson’s disease using shape features for machine learning on dopamine transporter single photon emission computed tomography
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6980558/
https://www.ncbi.nlm.nih.gov/pubmed/31978154
http://dx.doi.org/10.1371/journal.pone.0228289
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