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Improved multi-parametric prediction of tissue outcome in acute ischemic stroke patients using spatial features
INTRODUCTION: In recent years, numerous methods have been proposed to predict tissue outcome in acute stroke patients using machine learning methods incorporating multiparametric imaging data. Most methods include diffusion and perfusion parameters as image-based parameters but do not include any sp...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6980585/ https://www.ncbi.nlm.nih.gov/pubmed/31978179 http://dx.doi.org/10.1371/journal.pone.0228113 |
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author | Grosser, Malte Gellißen, Susanne Borchert, Patrick Sedlacik, Jan Nawabi, Jawed Fiehler, Jens Forkert, Nils Daniel |
author_facet | Grosser, Malte Gellißen, Susanne Borchert, Patrick Sedlacik, Jan Nawabi, Jawed Fiehler, Jens Forkert, Nils Daniel |
author_sort | Grosser, Malte |
collection | PubMed |
description | INTRODUCTION: In recent years, numerous methods have been proposed to predict tissue outcome in acute stroke patients using machine learning methods incorporating multiparametric imaging data. Most methods include diffusion and perfusion parameters as image-based parameters but do not include any spatial information although these parameters are spatially dependent, e.g. different perfusion properties in white and gray brain matter. This study aims to investigate if including spatial features improves the accuracy of multi-parametric tissue outcome prediction. MATERIALS AND METHODS: Acute and follow-up multi-center MRI datasets of 99 patients were available for this study. Logistic regression, random forest, and XGBoost machine learning models were trained and tested using acute MR diffusion and perfusion features and known follow-up lesions. Different combinations of atlas coordinates and lesion probability maps were included as spatial information. The stroke lesion predictions were compared to the true tissue outcomes using the area under the receiver operating characteristic curve (ROC AUC) and the Dice metric. RESULTS: The statistical analysis revealed that including spatial features significantly improves the tissue outcome prediction. Overall, the XGBoost and random forest models performed best in every setting and achieved state-of-the-art results regarding both metrics with similar improvements achieved including Montreal Neurological Institute (MNI) reference space coordinates or voxel-wise lesion probabilities. CONCLUSION: Spatial features should be integrated to improve lesion outcome prediction using machine learning models. |
format | Online Article Text |
id | pubmed-6980585 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-69805852020-02-04 Improved multi-parametric prediction of tissue outcome in acute ischemic stroke patients using spatial features Grosser, Malte Gellißen, Susanne Borchert, Patrick Sedlacik, Jan Nawabi, Jawed Fiehler, Jens Forkert, Nils Daniel PLoS One Research Article INTRODUCTION: In recent years, numerous methods have been proposed to predict tissue outcome in acute stroke patients using machine learning methods incorporating multiparametric imaging data. Most methods include diffusion and perfusion parameters as image-based parameters but do not include any spatial information although these parameters are spatially dependent, e.g. different perfusion properties in white and gray brain matter. This study aims to investigate if including spatial features improves the accuracy of multi-parametric tissue outcome prediction. MATERIALS AND METHODS: Acute and follow-up multi-center MRI datasets of 99 patients were available for this study. Logistic regression, random forest, and XGBoost machine learning models were trained and tested using acute MR diffusion and perfusion features and known follow-up lesions. Different combinations of atlas coordinates and lesion probability maps were included as spatial information. The stroke lesion predictions were compared to the true tissue outcomes using the area under the receiver operating characteristic curve (ROC AUC) and the Dice metric. RESULTS: The statistical analysis revealed that including spatial features significantly improves the tissue outcome prediction. Overall, the XGBoost and random forest models performed best in every setting and achieved state-of-the-art results regarding both metrics with similar improvements achieved including Montreal Neurological Institute (MNI) reference space coordinates or voxel-wise lesion probabilities. CONCLUSION: Spatial features should be integrated to improve lesion outcome prediction using machine learning models. Public Library of Science 2020-01-24 /pmc/articles/PMC6980585/ /pubmed/31978179 http://dx.doi.org/10.1371/journal.pone.0228113 Text en © 2020 Grosser et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Grosser, Malte Gellißen, Susanne Borchert, Patrick Sedlacik, Jan Nawabi, Jawed Fiehler, Jens Forkert, Nils Daniel Improved multi-parametric prediction of tissue outcome in acute ischemic stroke patients using spatial features |
title | Improved multi-parametric prediction of tissue outcome in acute ischemic stroke patients using spatial features |
title_full | Improved multi-parametric prediction of tissue outcome in acute ischemic stroke patients using spatial features |
title_fullStr | Improved multi-parametric prediction of tissue outcome in acute ischemic stroke patients using spatial features |
title_full_unstemmed | Improved multi-parametric prediction of tissue outcome in acute ischemic stroke patients using spatial features |
title_short | Improved multi-parametric prediction of tissue outcome in acute ischemic stroke patients using spatial features |
title_sort | improved multi-parametric prediction of tissue outcome in acute ischemic stroke patients using spatial features |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6980585/ https://www.ncbi.nlm.nih.gov/pubmed/31978179 http://dx.doi.org/10.1371/journal.pone.0228113 |
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