Cargando…

Performance of Qure.ai automatic classifiers against a large annotated database of patients with diverse forms of tuberculosis

Availability of trained radiologists for fast processing of CXRs in regions burdened with tuberculosis always has been a challenge, affecting both timely diagnosis and patient monitoring. The paucity of annotated images of lungs of TB patients hampers attempts to apply data-oriented algorithms for r...

Descripción completa

Detalles Bibliográficos
Autores principales: Engle, Eric, Gabrielian, Andrei, Long, Alyssa, Hurt, Darrell E., Rosenthal, Alex
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6980594/
https://www.ncbi.nlm.nih.gov/pubmed/31978149
http://dx.doi.org/10.1371/journal.pone.0224445
_version_ 1783490972799205376
author Engle, Eric
Gabrielian, Andrei
Long, Alyssa
Hurt, Darrell E.
Rosenthal, Alex
author_facet Engle, Eric
Gabrielian, Andrei
Long, Alyssa
Hurt, Darrell E.
Rosenthal, Alex
author_sort Engle, Eric
collection PubMed
description Availability of trained radiologists for fast processing of CXRs in regions burdened with tuberculosis always has been a challenge, affecting both timely diagnosis and patient monitoring. The paucity of annotated images of lungs of TB patients hampers attempts to apply data-oriented algorithms for research and clinical practices. The TB Portals Program database (TBPP, https://TBPortals.niaid.nih.gov) is a global collaboration curating a large collection of the most dangerous, hard-to-cure drug-resistant tuberculosis (DR-TB) patient cases. TBPP, with 1,179 (83%) DR-TB patient cases, is a unique collection that is well positioned as a testing ground for deep learning classifiers. As of January 2019, the TBPP database contains 1,538 CXRs, of which 346 (22.5%) are annotated by a radiologist and 104 (6.7%) by a pulmonologist–leaving 1,088 (70.7%) CXRs without annotations. The Qure.ai qXR artificial intelligence automated CXR interpretation tool, was blind-tested on the 346 radiologist-annotated CXRs from the TBPP database. Qure.ai qXR CXR predictions for cavity, nodule, pleural effusion, hilar lymphadenopathy was successfully matching human expert annotations. In addition, we tested the 12 Qure.ai classifiers to find whether they correlate with treatment success (information provided by treating physicians). Ten descriptors were found as significant: abnormal CXR (p = 0.0005), pleural effusion (p = 0.048), nodule (p = 0.0004), hilar lymphadenopathy (p = 0.0038), cavity (p = 0.0002), opacity (p = 0.0006), atelectasis (p = 0.0074), consolidation (p = 0.0004), indicator of TB disease (p = < .0001), and fibrosis (p = < .0001). We conclude that applying fully automated Qure.ai CXR analysis tool is useful for fast, accurate, uniform, large-scale CXR annotation assistance, as it performed well even for DR-TB cases that were not used for initial training. Testing artificial intelligence algorithms (encapsulating both machine learning and deep learning classifiers) on diverse data collections, such as TBPP, is critically important toward progressing to clinically adopted automatic assistants for medical data analysis.
format Online
Article
Text
id pubmed-6980594
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher Public Library of Science
record_format MEDLINE/PubMed
spelling pubmed-69805942020-02-04 Performance of Qure.ai automatic classifiers against a large annotated database of patients with diverse forms of tuberculosis Engle, Eric Gabrielian, Andrei Long, Alyssa Hurt, Darrell E. Rosenthal, Alex PLoS One Research Article Availability of trained radiologists for fast processing of CXRs in regions burdened with tuberculosis always has been a challenge, affecting both timely diagnosis and patient monitoring. The paucity of annotated images of lungs of TB patients hampers attempts to apply data-oriented algorithms for research and clinical practices. The TB Portals Program database (TBPP, https://TBPortals.niaid.nih.gov) is a global collaboration curating a large collection of the most dangerous, hard-to-cure drug-resistant tuberculosis (DR-TB) patient cases. TBPP, with 1,179 (83%) DR-TB patient cases, is a unique collection that is well positioned as a testing ground for deep learning classifiers. As of January 2019, the TBPP database contains 1,538 CXRs, of which 346 (22.5%) are annotated by a radiologist and 104 (6.7%) by a pulmonologist–leaving 1,088 (70.7%) CXRs without annotations. The Qure.ai qXR artificial intelligence automated CXR interpretation tool, was blind-tested on the 346 radiologist-annotated CXRs from the TBPP database. Qure.ai qXR CXR predictions for cavity, nodule, pleural effusion, hilar lymphadenopathy was successfully matching human expert annotations. In addition, we tested the 12 Qure.ai classifiers to find whether they correlate with treatment success (information provided by treating physicians). Ten descriptors were found as significant: abnormal CXR (p = 0.0005), pleural effusion (p = 0.048), nodule (p = 0.0004), hilar lymphadenopathy (p = 0.0038), cavity (p = 0.0002), opacity (p = 0.0006), atelectasis (p = 0.0074), consolidation (p = 0.0004), indicator of TB disease (p = < .0001), and fibrosis (p = < .0001). We conclude that applying fully automated Qure.ai CXR analysis tool is useful for fast, accurate, uniform, large-scale CXR annotation assistance, as it performed well even for DR-TB cases that were not used for initial training. Testing artificial intelligence algorithms (encapsulating both machine learning and deep learning classifiers) on diverse data collections, such as TBPP, is critically important toward progressing to clinically adopted automatic assistants for medical data analysis. Public Library of Science 2020-01-24 /pmc/articles/PMC6980594/ /pubmed/31978149 http://dx.doi.org/10.1371/journal.pone.0224445 Text en https://creativecommons.org/publicdomain/zero/1.0/ This is an open access article, free of all copyright, and may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose. The work is made available under the Creative Commons CC0 (https://creativecommons.org/publicdomain/zero/1.0/) public domain dedication.
spellingShingle Research Article
Engle, Eric
Gabrielian, Andrei
Long, Alyssa
Hurt, Darrell E.
Rosenthal, Alex
Performance of Qure.ai automatic classifiers against a large annotated database of patients with diverse forms of tuberculosis
title Performance of Qure.ai automatic classifiers against a large annotated database of patients with diverse forms of tuberculosis
title_full Performance of Qure.ai automatic classifiers against a large annotated database of patients with diverse forms of tuberculosis
title_fullStr Performance of Qure.ai automatic classifiers against a large annotated database of patients with diverse forms of tuberculosis
title_full_unstemmed Performance of Qure.ai automatic classifiers against a large annotated database of patients with diverse forms of tuberculosis
title_short Performance of Qure.ai automatic classifiers against a large annotated database of patients with diverse forms of tuberculosis
title_sort performance of qure.ai automatic classifiers against a large annotated database of patients with diverse forms of tuberculosis
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6980594/
https://www.ncbi.nlm.nih.gov/pubmed/31978149
http://dx.doi.org/10.1371/journal.pone.0224445
work_keys_str_mv AT engleeric performanceofqureaiautomaticclassifiersagainstalargeannotateddatabaseofpatientswithdiverseformsoftuberculosis
AT gabrielianandrei performanceofqureaiautomaticclassifiersagainstalargeannotateddatabaseofpatientswithdiverseformsoftuberculosis
AT longalyssa performanceofqureaiautomaticclassifiersagainstalargeannotateddatabaseofpatientswithdiverseformsoftuberculosis
AT hurtdarrelle performanceofqureaiautomaticclassifiersagainstalargeannotateddatabaseofpatientswithdiverseformsoftuberculosis
AT rosenthalalex performanceofqureaiautomaticclassifiersagainstalargeannotateddatabaseofpatientswithdiverseformsoftuberculosis