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DetEdit: A graphical user interface for annotating and editing events detected in long-term acoustic monitoring data

Passive acoustic monitoring has become an important data collection method, yielding massive datasets replete with biological, environmental and anthropogenic information. Automated signal detectors and classifiers are needed to identify events within these datasets, such as the presence of species-...

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Autores principales: Solsona-Berga, Alba, Frasier, Kaitlin E., Baumann-Pickering, Simone, Wiggins, Sean M., Hildebrand, John A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6980688/
https://www.ncbi.nlm.nih.gov/pubmed/31929520
http://dx.doi.org/10.1371/journal.pcbi.1007598
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author Solsona-Berga, Alba
Frasier, Kaitlin E.
Baumann-Pickering, Simone
Wiggins, Sean M.
Hildebrand, John A.
author_facet Solsona-Berga, Alba
Frasier, Kaitlin E.
Baumann-Pickering, Simone
Wiggins, Sean M.
Hildebrand, John A.
author_sort Solsona-Berga, Alba
collection PubMed
description Passive acoustic monitoring has become an important data collection method, yielding massive datasets replete with biological, environmental and anthropogenic information. Automated signal detectors and classifiers are needed to identify events within these datasets, such as the presence of species-specific sounds or anthropogenic noise. These automated methods, however, are rarely a complete substitute for expert analyst review. The ability to visualize and annotate acoustic events efficiently can enhance scientific insights from large, previously intractable datasets. A MATLAB-based graphical user interface, called DetEdit, was developed to accelerate the editing and annotating of automated detections from extensive acoustic datasets. This tool is highly-configurable and multipurpose, with uses ranging from annotation and classification of individual signals or signal-clusters and evaluation of signal properties, to identification of false detections and false positive rate estimation. DetEdit allows users to step through acoustic events, displaying a range of signal features, including time series of received levels, long-term spectral averages, time intervals between detections, and scatter plots of peak frequency, RMS, and peak-to-peak received levels. Additionally, it displays either individual, or averaged sound pressure waveforms, and power spectra within each acoustic event. These views simultaneously provide analysts with signal-level detail and encounter-level context. DetEdit creates datasets of signal labels for further analyses, such as training classifiers and quantifying occurrence, abundances, or trends. Although designed for evaluating underwater-recorded odontocete echolocation click detections, DetEdit can be adapted to almost any stereotyped impulsive signal. Our software package complements available tools for the bioacoustic community and is provided open source at https://github.com/MarineBioAcousticsRC/DetEdit.
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spelling pubmed-69806882020-02-07 DetEdit: A graphical user interface for annotating and editing events detected in long-term acoustic monitoring data Solsona-Berga, Alba Frasier, Kaitlin E. Baumann-Pickering, Simone Wiggins, Sean M. Hildebrand, John A. PLoS Comput Biol Research Article Passive acoustic monitoring has become an important data collection method, yielding massive datasets replete with biological, environmental and anthropogenic information. Automated signal detectors and classifiers are needed to identify events within these datasets, such as the presence of species-specific sounds or anthropogenic noise. These automated methods, however, are rarely a complete substitute for expert analyst review. The ability to visualize and annotate acoustic events efficiently can enhance scientific insights from large, previously intractable datasets. A MATLAB-based graphical user interface, called DetEdit, was developed to accelerate the editing and annotating of automated detections from extensive acoustic datasets. This tool is highly-configurable and multipurpose, with uses ranging from annotation and classification of individual signals or signal-clusters and evaluation of signal properties, to identification of false detections and false positive rate estimation. DetEdit allows users to step through acoustic events, displaying a range of signal features, including time series of received levels, long-term spectral averages, time intervals between detections, and scatter plots of peak frequency, RMS, and peak-to-peak received levels. Additionally, it displays either individual, or averaged sound pressure waveforms, and power spectra within each acoustic event. These views simultaneously provide analysts with signal-level detail and encounter-level context. DetEdit creates datasets of signal labels for further analyses, such as training classifiers and quantifying occurrence, abundances, or trends. Although designed for evaluating underwater-recorded odontocete echolocation click detections, DetEdit can be adapted to almost any stereotyped impulsive signal. Our software package complements available tools for the bioacoustic community and is provided open source at https://github.com/MarineBioAcousticsRC/DetEdit. Public Library of Science 2020-01-13 /pmc/articles/PMC6980688/ /pubmed/31929520 http://dx.doi.org/10.1371/journal.pcbi.1007598 Text en © 2020 Solsona-Berga et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Solsona-Berga, Alba
Frasier, Kaitlin E.
Baumann-Pickering, Simone
Wiggins, Sean M.
Hildebrand, John A.
DetEdit: A graphical user interface for annotating and editing events detected in long-term acoustic monitoring data
title DetEdit: A graphical user interface for annotating and editing events detected in long-term acoustic monitoring data
title_full DetEdit: A graphical user interface for annotating and editing events detected in long-term acoustic monitoring data
title_fullStr DetEdit: A graphical user interface for annotating and editing events detected in long-term acoustic monitoring data
title_full_unstemmed DetEdit: A graphical user interface for annotating and editing events detected in long-term acoustic monitoring data
title_short DetEdit: A graphical user interface for annotating and editing events detected in long-term acoustic monitoring data
title_sort detedit: a graphical user interface for annotating and editing events detected in long-term acoustic monitoring data
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6980688/
https://www.ncbi.nlm.nih.gov/pubmed/31929520
http://dx.doi.org/10.1371/journal.pcbi.1007598
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