Cargando…
ModelTest-NG: A New and Scalable Tool for the Selection of DNA and Protein Evolutionary Models
ModelTest-NG is a reimplementation from scratch of jModelTest and ProtTest, two popular tools for selecting the best-fit nucleotide and amino acid substitution models, respectively. ModelTest-NG is one to two orders of magnitude faster than jModelTest and ProtTest but equally accurate and introduces...
Autores principales: | , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2020
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6984357/ https://www.ncbi.nlm.nih.gov/pubmed/31432070 http://dx.doi.org/10.1093/molbev/msz189 |
_version_ | 1783491639707172864 |
---|---|
author | Darriba, Diego Posada, David Kozlov, Alexey M Stamatakis, Alexandros Morel, Benoit Flouri, Tomas |
author_facet | Darriba, Diego Posada, David Kozlov, Alexey M Stamatakis, Alexandros Morel, Benoit Flouri, Tomas |
author_sort | Darriba, Diego |
collection | PubMed |
description | ModelTest-NG is a reimplementation from scratch of jModelTest and ProtTest, two popular tools for selecting the best-fit nucleotide and amino acid substitution models, respectively. ModelTest-NG is one to two orders of magnitude faster than jModelTest and ProtTest but equally accurate and introduces several new features, such as ascertainment bias correction, mixture, and free-rate models, or the automatic processing of single partitions. ModelTest-NG is available under a GNU GPL3 license at https://github.com/ddarriba/modeltest , last accessed September 2, 2019. |
format | Online Article Text |
id | pubmed-6984357 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-69843572020-01-30 ModelTest-NG: A New and Scalable Tool for the Selection of DNA and Protein Evolutionary Models Darriba, Diego Posada, David Kozlov, Alexey M Stamatakis, Alexandros Morel, Benoit Flouri, Tomas Mol Biol Evol Resources ModelTest-NG is a reimplementation from scratch of jModelTest and ProtTest, two popular tools for selecting the best-fit nucleotide and amino acid substitution models, respectively. ModelTest-NG is one to two orders of magnitude faster than jModelTest and ProtTest but equally accurate and introduces several new features, such as ascertainment bias correction, mixture, and free-rate models, or the automatic processing of single partitions. ModelTest-NG is available under a GNU GPL3 license at https://github.com/ddarriba/modeltest , last accessed September 2, 2019. Oxford University Press 2020-01 2019-08-21 /pmc/articles/PMC6984357/ /pubmed/31432070 http://dx.doi.org/10.1093/molbev/msz189 Text en © The Author(s) 2019. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Resources Darriba, Diego Posada, David Kozlov, Alexey M Stamatakis, Alexandros Morel, Benoit Flouri, Tomas ModelTest-NG: A New and Scalable Tool for the Selection of DNA and Protein Evolutionary Models |
title | ModelTest-NG: A New and Scalable Tool for the Selection of DNA and Protein Evolutionary Models |
title_full | ModelTest-NG: A New and Scalable Tool for the Selection of DNA and Protein Evolutionary Models |
title_fullStr | ModelTest-NG: A New and Scalable Tool for the Selection of DNA and Protein Evolutionary Models |
title_full_unstemmed | ModelTest-NG: A New and Scalable Tool for the Selection of DNA and Protein Evolutionary Models |
title_short | ModelTest-NG: A New and Scalable Tool for the Selection of DNA and Protein Evolutionary Models |
title_sort | modeltest-ng: a new and scalable tool for the selection of dna and protein evolutionary models |
topic | Resources |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6984357/ https://www.ncbi.nlm.nih.gov/pubmed/31432070 http://dx.doi.org/10.1093/molbev/msz189 |
work_keys_str_mv | AT darribadiego modeltestnganewandscalabletoolfortheselectionofdnaandproteinevolutionarymodels AT posadadavid modeltestnganewandscalabletoolfortheselectionofdnaandproteinevolutionarymodels AT kozlovalexeym modeltestnganewandscalabletoolfortheselectionofdnaandproteinevolutionarymodels AT stamatakisalexandros modeltestnganewandscalabletoolfortheselectionofdnaandproteinevolutionarymodels AT morelbenoit modeltestnganewandscalabletoolfortheselectionofdnaandproteinevolutionarymodels AT flouritomas modeltestnganewandscalabletoolfortheselectionofdnaandproteinevolutionarymodels |