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Artificial Intelligence for Cardiac Imaging-Genetics Research
Cardiovascular conditions remain the leading cause of mortality and morbidity worldwide, with genotype being a significant influence on disease risk. Cardiac imaging-genetics aims to identify and characterize the genetic variants that influence functional, physiological, and anatomical phenotypes de...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6985036/ https://www.ncbi.nlm.nih.gov/pubmed/32039240 http://dx.doi.org/10.3389/fcvm.2019.00195 |
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author | de Marvao, Antonio Dawes, Timothy J. W. O'Regan, Declan P. |
author_facet | de Marvao, Antonio Dawes, Timothy J. W. O'Regan, Declan P. |
author_sort | de Marvao, Antonio |
collection | PubMed |
description | Cardiovascular conditions remain the leading cause of mortality and morbidity worldwide, with genotype being a significant influence on disease risk. Cardiac imaging-genetics aims to identify and characterize the genetic variants that influence functional, physiological, and anatomical phenotypes derived from cardiovascular imaging. High-throughput DNA sequencing and genotyping have greatly accelerated genetic discovery, making variant interpretation one of the key challenges in contemporary clinical genetics. Heterogeneous, low-fidelity phenotyping and difficulties integrating and then analyzing large-scale genetic, imaging and clinical datasets using traditional statistical approaches have impeded process. Artificial intelligence (AI) methods, such as deep learning, are particularly suited to tackle the challenges of scalability and high dimensionality of data and show promise in the field of cardiac imaging-genetics. Here we review the current state of AI as applied to imaging-genetics research and discuss outstanding methodological challenges, as the field moves from pilot studies to mainstream applications, from one dimensional global descriptors to high-resolution models of whole-organ shape and function, from univariate to multivariate analysis and from candidate gene to genome-wide approaches. Finally, we consider the future directions and prospects of AI imaging-genetics for ultimately helping understand the genetic and environmental underpinnings of cardiovascular health and disease. |
format | Online Article Text |
id | pubmed-6985036 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-69850362020-02-07 Artificial Intelligence for Cardiac Imaging-Genetics Research de Marvao, Antonio Dawes, Timothy J. W. O'Regan, Declan P. Front Cardiovasc Med Cardiovascular Medicine Cardiovascular conditions remain the leading cause of mortality and morbidity worldwide, with genotype being a significant influence on disease risk. Cardiac imaging-genetics aims to identify and characterize the genetic variants that influence functional, physiological, and anatomical phenotypes derived from cardiovascular imaging. High-throughput DNA sequencing and genotyping have greatly accelerated genetic discovery, making variant interpretation one of the key challenges in contemporary clinical genetics. Heterogeneous, low-fidelity phenotyping and difficulties integrating and then analyzing large-scale genetic, imaging and clinical datasets using traditional statistical approaches have impeded process. Artificial intelligence (AI) methods, such as deep learning, are particularly suited to tackle the challenges of scalability and high dimensionality of data and show promise in the field of cardiac imaging-genetics. Here we review the current state of AI as applied to imaging-genetics research and discuss outstanding methodological challenges, as the field moves from pilot studies to mainstream applications, from one dimensional global descriptors to high-resolution models of whole-organ shape and function, from univariate to multivariate analysis and from candidate gene to genome-wide approaches. Finally, we consider the future directions and prospects of AI imaging-genetics for ultimately helping understand the genetic and environmental underpinnings of cardiovascular health and disease. Frontiers Media S.A. 2020-01-21 /pmc/articles/PMC6985036/ /pubmed/32039240 http://dx.doi.org/10.3389/fcvm.2019.00195 Text en Copyright © 2020 de Marvao, Dawes and O'Regan. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Cardiovascular Medicine de Marvao, Antonio Dawes, Timothy J. W. O'Regan, Declan P. Artificial Intelligence for Cardiac Imaging-Genetics Research |
title | Artificial Intelligence for Cardiac Imaging-Genetics Research |
title_full | Artificial Intelligence for Cardiac Imaging-Genetics Research |
title_fullStr | Artificial Intelligence for Cardiac Imaging-Genetics Research |
title_full_unstemmed | Artificial Intelligence for Cardiac Imaging-Genetics Research |
title_short | Artificial Intelligence for Cardiac Imaging-Genetics Research |
title_sort | artificial intelligence for cardiac imaging-genetics research |
topic | Cardiovascular Medicine |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6985036/ https://www.ncbi.nlm.nih.gov/pubmed/32039240 http://dx.doi.org/10.3389/fcvm.2019.00195 |
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