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Advances in Kriging-Based Autonomous X-Ray Scattering Experiments
Autonomous experimentation is an emerging paradigm for scientific discovery, wherein measurement instruments are augmented with decision-making algorithms, allowing them to autonomously explore parameter spaces of interest. We have recently demonstrated a generalized approach to autonomous experimen...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6987221/ https://www.ncbi.nlm.nih.gov/pubmed/31992725 http://dx.doi.org/10.1038/s41598-020-57887-x |
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author | Noack, Marcus M. Doerk, Gregory S. Li, Ruipeng Fukuto, Masafumi Yager, Kevin G. |
author_facet | Noack, Marcus M. Doerk, Gregory S. Li, Ruipeng Fukuto, Masafumi Yager, Kevin G. |
author_sort | Noack, Marcus M. |
collection | PubMed |
description | Autonomous experimentation is an emerging paradigm for scientific discovery, wherein measurement instruments are augmented with decision-making algorithms, allowing them to autonomously explore parameter spaces of interest. We have recently demonstrated a generalized approach to autonomous experimental control, based on generating a surrogate model to interpolate experimental data, and a corresponding uncertainty model, which are computed using a Gaussian process regression known as ordinary Kriging (OK). We demonstrated the successful application of this method to exploring materials science problems using x-ray scattering measurements at a synchrotron beamline. Here, we report several improvements to this methodology that overcome limitations of traditional Kriging methods. The variogram underlying OK is global and thus insensitive to local data variation. We augment the Kriging variance with model-based measures, for instance providing local sensitivity by including the gradient of the surrogate model. As with most statistical regression methods, OK minimizes the number of measurements required to achieve a particular model quality. However, in practice this may not be the most stringent experimental constraint; e.g. the goal may instead be to minimize experiment duration or material usage. We define an adaptive cost function, allowing the autonomous method to balance information gain against measured experimental cost. We provide synthetic and experimental demonstrations, validating that this improved algorithm yields more efficient autonomous data collection. |
format | Online Article Text |
id | pubmed-6987221 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-69872212020-02-03 Advances in Kriging-Based Autonomous X-Ray Scattering Experiments Noack, Marcus M. Doerk, Gregory S. Li, Ruipeng Fukuto, Masafumi Yager, Kevin G. Sci Rep Article Autonomous experimentation is an emerging paradigm for scientific discovery, wherein measurement instruments are augmented with decision-making algorithms, allowing them to autonomously explore parameter spaces of interest. We have recently demonstrated a generalized approach to autonomous experimental control, based on generating a surrogate model to interpolate experimental data, and a corresponding uncertainty model, which are computed using a Gaussian process regression known as ordinary Kriging (OK). We demonstrated the successful application of this method to exploring materials science problems using x-ray scattering measurements at a synchrotron beamline. Here, we report several improvements to this methodology that overcome limitations of traditional Kriging methods. The variogram underlying OK is global and thus insensitive to local data variation. We augment the Kriging variance with model-based measures, for instance providing local sensitivity by including the gradient of the surrogate model. As with most statistical regression methods, OK minimizes the number of measurements required to achieve a particular model quality. However, in practice this may not be the most stringent experimental constraint; e.g. the goal may instead be to minimize experiment duration or material usage. We define an adaptive cost function, allowing the autonomous method to balance information gain against measured experimental cost. We provide synthetic and experimental demonstrations, validating that this improved algorithm yields more efficient autonomous data collection. Nature Publishing Group UK 2020-01-28 /pmc/articles/PMC6987221/ /pubmed/31992725 http://dx.doi.org/10.1038/s41598-020-57887-x Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Noack, Marcus M. Doerk, Gregory S. Li, Ruipeng Fukuto, Masafumi Yager, Kevin G. Advances in Kriging-Based Autonomous X-Ray Scattering Experiments |
title | Advances in Kriging-Based Autonomous X-Ray Scattering Experiments |
title_full | Advances in Kriging-Based Autonomous X-Ray Scattering Experiments |
title_fullStr | Advances in Kriging-Based Autonomous X-Ray Scattering Experiments |
title_full_unstemmed | Advances in Kriging-Based Autonomous X-Ray Scattering Experiments |
title_short | Advances in Kriging-Based Autonomous X-Ray Scattering Experiments |
title_sort | advances in kriging-based autonomous x-ray scattering experiments |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6987221/ https://www.ncbi.nlm.nih.gov/pubmed/31992725 http://dx.doi.org/10.1038/s41598-020-57887-x |
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