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Advances in Kriging-Based Autonomous X-Ray Scattering Experiments

Autonomous experimentation is an emerging paradigm for scientific discovery, wherein measurement instruments are augmented with decision-making algorithms, allowing them to autonomously explore parameter spaces of interest. We have recently demonstrated a generalized approach to autonomous experimen...

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Autores principales: Noack, Marcus M., Doerk, Gregory S., Li, Ruipeng, Fukuto, Masafumi, Yager, Kevin G.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6987221/
https://www.ncbi.nlm.nih.gov/pubmed/31992725
http://dx.doi.org/10.1038/s41598-020-57887-x
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author Noack, Marcus M.
Doerk, Gregory S.
Li, Ruipeng
Fukuto, Masafumi
Yager, Kevin G.
author_facet Noack, Marcus M.
Doerk, Gregory S.
Li, Ruipeng
Fukuto, Masafumi
Yager, Kevin G.
author_sort Noack, Marcus M.
collection PubMed
description Autonomous experimentation is an emerging paradigm for scientific discovery, wherein measurement instruments are augmented with decision-making algorithms, allowing them to autonomously explore parameter spaces of interest. We have recently demonstrated a generalized approach to autonomous experimental control, based on generating a surrogate model to interpolate experimental data, and a corresponding uncertainty model, which are computed using a Gaussian process regression known as ordinary Kriging (OK). We demonstrated the successful application of this method to exploring materials science problems using x-ray scattering measurements at a synchrotron beamline. Here, we report several improvements to this methodology that overcome limitations of traditional Kriging methods. The variogram underlying OK is global and thus insensitive to local data variation. We augment the Kriging variance with model-based measures, for instance providing local sensitivity by including the gradient of the surrogate model. As with most statistical regression methods, OK minimizes the number of measurements required to achieve a particular model quality. However, in practice this may not be the most stringent experimental constraint; e.g. the goal may instead be to minimize experiment duration or material usage. We define an adaptive cost function, allowing the autonomous method to balance information gain against measured experimental cost. We provide synthetic and experimental demonstrations, validating that this improved algorithm yields more efficient autonomous data collection.
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spelling pubmed-69872212020-02-03 Advances in Kriging-Based Autonomous X-Ray Scattering Experiments Noack, Marcus M. Doerk, Gregory S. Li, Ruipeng Fukuto, Masafumi Yager, Kevin G. Sci Rep Article Autonomous experimentation is an emerging paradigm for scientific discovery, wherein measurement instruments are augmented with decision-making algorithms, allowing them to autonomously explore parameter spaces of interest. We have recently demonstrated a generalized approach to autonomous experimental control, based on generating a surrogate model to interpolate experimental data, and a corresponding uncertainty model, which are computed using a Gaussian process regression known as ordinary Kriging (OK). We demonstrated the successful application of this method to exploring materials science problems using x-ray scattering measurements at a synchrotron beamline. Here, we report several improvements to this methodology that overcome limitations of traditional Kriging methods. The variogram underlying OK is global and thus insensitive to local data variation. We augment the Kriging variance with model-based measures, for instance providing local sensitivity by including the gradient of the surrogate model. As with most statistical regression methods, OK minimizes the number of measurements required to achieve a particular model quality. However, in practice this may not be the most stringent experimental constraint; e.g. the goal may instead be to minimize experiment duration or material usage. We define an adaptive cost function, allowing the autonomous method to balance information gain against measured experimental cost. We provide synthetic and experimental demonstrations, validating that this improved algorithm yields more efficient autonomous data collection. Nature Publishing Group UK 2020-01-28 /pmc/articles/PMC6987221/ /pubmed/31992725 http://dx.doi.org/10.1038/s41598-020-57887-x Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Noack, Marcus M.
Doerk, Gregory S.
Li, Ruipeng
Fukuto, Masafumi
Yager, Kevin G.
Advances in Kriging-Based Autonomous X-Ray Scattering Experiments
title Advances in Kriging-Based Autonomous X-Ray Scattering Experiments
title_full Advances in Kriging-Based Autonomous X-Ray Scattering Experiments
title_fullStr Advances in Kriging-Based Autonomous X-Ray Scattering Experiments
title_full_unstemmed Advances in Kriging-Based Autonomous X-Ray Scattering Experiments
title_short Advances in Kriging-Based Autonomous X-Ray Scattering Experiments
title_sort advances in kriging-based autonomous x-ray scattering experiments
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6987221/
https://www.ncbi.nlm.nih.gov/pubmed/31992725
http://dx.doi.org/10.1038/s41598-020-57887-x
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