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Use of a rapid recombinase-aided amplification assay for Mycoplasma pneumoniae detection
BACKGROUND: Mycoplasma pneumoniae is one of the most common causative pathogens of community-acquired pneumonia (CAP), accounting for as many as 30–50% of CAP during peak years. An early and rapid diagnostic method is key for guiding clinicians in their choice of antibiotics. METHODS: The recombinas...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6988361/ https://www.ncbi.nlm.nih.gov/pubmed/31992210 http://dx.doi.org/10.1186/s12879-019-4750-4 |
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author | Xue, Guanhua Li, Shaoli Zhao, Hanqing Yan, Chao Feng, Yanling Cui, Jinghua Jiang, Tingting Yuan, Jing |
author_facet | Xue, Guanhua Li, Shaoli Zhao, Hanqing Yan, Chao Feng, Yanling Cui, Jinghua Jiang, Tingting Yuan, Jing |
author_sort | Xue, Guanhua |
collection | PubMed |
description | BACKGROUND: Mycoplasma pneumoniae is one of the most common causative pathogens of community-acquired pneumonia (CAP), accounting for as many as 30–50% of CAP during peak years. An early and rapid diagnostic method is key for guiding clinicians in their choice of antibiotics. METHODS: The recombinase-aided amplification (RAA) assay is a recently developed, rapid detection method that has been used for the detection of several pathogens. The assays were performed in a one-step single tube reaction at 39° Celsius within 15–30 min. In this study, we established an RAA assay for M. pneumoniae using clinical specimens for validation and commercial real-time PCR as the reference method. RESULTS: The analytical sensitivity of the RAA assay was 2.23 copies per reaction, and no cross-reactions with any of the other 15 related respiratory bacterial pathogens were observed. Compared with the commercial real-time PCR assay used when testing 311 respiratory specimens, the RAA assay obtained 100% sensitivity and 100% specificity with a kappa value of 1. CONCLUSIONS: These results demonstrate that the proposed RAA assay will be of benefit as a faster, sensitive, and specific alternative tool for the detection of M. pneumoniae. |
format | Online Article Text |
id | pubmed-6988361 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-69883612020-02-03 Use of a rapid recombinase-aided amplification assay for Mycoplasma pneumoniae detection Xue, Guanhua Li, Shaoli Zhao, Hanqing Yan, Chao Feng, Yanling Cui, Jinghua Jiang, Tingting Yuan, Jing BMC Infect Dis Research Article BACKGROUND: Mycoplasma pneumoniae is one of the most common causative pathogens of community-acquired pneumonia (CAP), accounting for as many as 30–50% of CAP during peak years. An early and rapid diagnostic method is key for guiding clinicians in their choice of antibiotics. METHODS: The recombinase-aided amplification (RAA) assay is a recently developed, rapid detection method that has been used for the detection of several pathogens. The assays were performed in a one-step single tube reaction at 39° Celsius within 15–30 min. In this study, we established an RAA assay for M. pneumoniae using clinical specimens for validation and commercial real-time PCR as the reference method. RESULTS: The analytical sensitivity of the RAA assay was 2.23 copies per reaction, and no cross-reactions with any of the other 15 related respiratory bacterial pathogens were observed. Compared with the commercial real-time PCR assay used when testing 311 respiratory specimens, the RAA assay obtained 100% sensitivity and 100% specificity with a kappa value of 1. CONCLUSIONS: These results demonstrate that the proposed RAA assay will be of benefit as a faster, sensitive, and specific alternative tool for the detection of M. pneumoniae. BioMed Central 2020-01-28 /pmc/articles/PMC6988361/ /pubmed/31992210 http://dx.doi.org/10.1186/s12879-019-4750-4 Text en © The Author(s). 2020 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Research Article Xue, Guanhua Li, Shaoli Zhao, Hanqing Yan, Chao Feng, Yanling Cui, Jinghua Jiang, Tingting Yuan, Jing Use of a rapid recombinase-aided amplification assay for Mycoplasma pneumoniae detection |
title | Use of a rapid recombinase-aided amplification assay for Mycoplasma pneumoniae detection |
title_full | Use of a rapid recombinase-aided amplification assay for Mycoplasma pneumoniae detection |
title_fullStr | Use of a rapid recombinase-aided amplification assay for Mycoplasma pneumoniae detection |
title_full_unstemmed | Use of a rapid recombinase-aided amplification assay for Mycoplasma pneumoniae detection |
title_short | Use of a rapid recombinase-aided amplification assay for Mycoplasma pneumoniae detection |
title_sort | use of a rapid recombinase-aided amplification assay for mycoplasma pneumoniae detection |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6988361/ https://www.ncbi.nlm.nih.gov/pubmed/31992210 http://dx.doi.org/10.1186/s12879-019-4750-4 |
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