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Use of a rapid recombinase-aided amplification assay for Mycoplasma pneumoniae detection

BACKGROUND: Mycoplasma pneumoniae is one of the most common causative pathogens of community-acquired pneumonia (CAP), accounting for as many as 30–50% of CAP during peak years. An early and rapid diagnostic method is key for guiding clinicians in their choice of antibiotics. METHODS: The recombinas...

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Autores principales: Xue, Guanhua, Li, Shaoli, Zhao, Hanqing, Yan, Chao, Feng, Yanling, Cui, Jinghua, Jiang, Tingting, Yuan, Jing
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6988361/
https://www.ncbi.nlm.nih.gov/pubmed/31992210
http://dx.doi.org/10.1186/s12879-019-4750-4
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author Xue, Guanhua
Li, Shaoli
Zhao, Hanqing
Yan, Chao
Feng, Yanling
Cui, Jinghua
Jiang, Tingting
Yuan, Jing
author_facet Xue, Guanhua
Li, Shaoli
Zhao, Hanqing
Yan, Chao
Feng, Yanling
Cui, Jinghua
Jiang, Tingting
Yuan, Jing
author_sort Xue, Guanhua
collection PubMed
description BACKGROUND: Mycoplasma pneumoniae is one of the most common causative pathogens of community-acquired pneumonia (CAP), accounting for as many as 30–50% of CAP during peak years. An early and rapid diagnostic method is key for guiding clinicians in their choice of antibiotics. METHODS: The recombinase-aided amplification (RAA) assay is a recently developed, rapid detection method that has been used for the detection of several pathogens. The assays were performed in a one-step single tube reaction at 39° Celsius within 15–30 min. In this study, we established an RAA assay for M. pneumoniae using clinical specimens for validation and commercial real-time PCR as the reference method. RESULTS: The analytical sensitivity of the RAA assay was 2.23 copies per reaction, and no cross-reactions with any of the other 15 related respiratory bacterial pathogens were observed. Compared with the commercial real-time PCR assay used when testing 311 respiratory specimens, the RAA assay obtained 100% sensitivity and 100% specificity with a kappa value of 1. CONCLUSIONS: These results demonstrate that the proposed RAA assay will be of benefit as a faster, sensitive, and specific alternative tool for the detection of M. pneumoniae.
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spelling pubmed-69883612020-02-03 Use of a rapid recombinase-aided amplification assay for Mycoplasma pneumoniae detection Xue, Guanhua Li, Shaoli Zhao, Hanqing Yan, Chao Feng, Yanling Cui, Jinghua Jiang, Tingting Yuan, Jing BMC Infect Dis Research Article BACKGROUND: Mycoplasma pneumoniae is one of the most common causative pathogens of community-acquired pneumonia (CAP), accounting for as many as 30–50% of CAP during peak years. An early and rapid diagnostic method is key for guiding clinicians in their choice of antibiotics. METHODS: The recombinase-aided amplification (RAA) assay is a recently developed, rapid detection method that has been used for the detection of several pathogens. The assays were performed in a one-step single tube reaction at 39° Celsius within 15–30 min. In this study, we established an RAA assay for M. pneumoniae using clinical specimens for validation and commercial real-time PCR as the reference method. RESULTS: The analytical sensitivity of the RAA assay was 2.23 copies per reaction, and no cross-reactions with any of the other 15 related respiratory bacterial pathogens were observed. Compared with the commercial real-time PCR assay used when testing 311 respiratory specimens, the RAA assay obtained 100% sensitivity and 100% specificity with a kappa value of 1. CONCLUSIONS: These results demonstrate that the proposed RAA assay will be of benefit as a faster, sensitive, and specific alternative tool for the detection of M. pneumoniae. BioMed Central 2020-01-28 /pmc/articles/PMC6988361/ /pubmed/31992210 http://dx.doi.org/10.1186/s12879-019-4750-4 Text en © The Author(s). 2020 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Research Article
Xue, Guanhua
Li, Shaoli
Zhao, Hanqing
Yan, Chao
Feng, Yanling
Cui, Jinghua
Jiang, Tingting
Yuan, Jing
Use of a rapid recombinase-aided amplification assay for Mycoplasma pneumoniae detection
title Use of a rapid recombinase-aided amplification assay for Mycoplasma pneumoniae detection
title_full Use of a rapid recombinase-aided amplification assay for Mycoplasma pneumoniae detection
title_fullStr Use of a rapid recombinase-aided amplification assay for Mycoplasma pneumoniae detection
title_full_unstemmed Use of a rapid recombinase-aided amplification assay for Mycoplasma pneumoniae detection
title_short Use of a rapid recombinase-aided amplification assay for Mycoplasma pneumoniae detection
title_sort use of a rapid recombinase-aided amplification assay for mycoplasma pneumoniae detection
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6988361/
https://www.ncbi.nlm.nih.gov/pubmed/31992210
http://dx.doi.org/10.1186/s12879-019-4750-4
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