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Transfer Learning for Toxoplasma gondii Recognition
Toxoplasma gondii, one of the world’s most common parasites, can infect all types of warm-blooded animals, including one-third of the world’s human population. Most current routine diagnostic methods are costly, time-consuming, and labor-intensive. Although T. gondii can be directly observed under t...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Society for Microbiology
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6989130/ https://www.ncbi.nlm.nih.gov/pubmed/31992631 http://dx.doi.org/10.1128/mSystems.00445-19 |
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author | Li, Sen Li, Aijia Molina Lara, Diego Alejandro Gómez Marín, Jorge Enrique Juhas, Mario Zhang, Yang |
author_facet | Li, Sen Li, Aijia Molina Lara, Diego Alejandro Gómez Marín, Jorge Enrique Juhas, Mario Zhang, Yang |
author_sort | Li, Sen |
collection | PubMed |
description | Toxoplasma gondii, one of the world’s most common parasites, can infect all types of warm-blooded animals, including one-third of the world’s human population. Most current routine diagnostic methods are costly, time-consuming, and labor-intensive. Although T. gondii can be directly observed under the microscope in tissue or spinal fluid samples, this form of identification is difficult and requires well-trained professionals. Nevertheless, the traditional identification of parasites under the microscope is still performed by a large number of laboratories. Novel, efficient, and reliable methods of T. gondii identification are therefore needed, particularly in developing countries. To this end, we developed a novel transfer learning-based microscopic image recognition method for T. gondii identification. This approach employs the fuzzy cycle generative adversarial network (FCGAN) with transfer learning utilizing knowledge gained by parasitologists that Toxoplasma is banana or crescent shaped. Our approach aims to build connections between microscopic and macroscopic associated objects by embedding the fuzzy C-means cluster algorithm into the cycle generative adversarial network (Cycle GAN). Our approach achieves 93.1% and 94.0% detection accuracy for ×400 and ×1,000 Toxoplasma microscopic images, respectively. We showed the high accuracy and effectiveness of our approach in newly collected unlabeled Toxoplasma microscopic images, compared to other currently available deep learning methods. This novel method for Toxoplasma microscopic image recognition will open a new window for developing cost-effective and scalable deep learning-based diagnostic solutions, potentially enabling broader clinical access in developing countries. IMPORTANCE Toxoplasma gondii, one of the world’s most common parasites, can infect all types of warm-blooded animals, including one-third of the world’s human population. Artificial intelligence (AI) could provide accurate and rapid diagnosis in fighting Toxoplasma. So far, none of the previously reported deep learning methods have attempted to explore the advantages of transfer learning for Toxoplasma detection. The knowledge from parasitologists is that the Toxoplasma parasite is generally banana or crescent shaped. Based on this, we built connections between microscopic and macroscopic associated objects by embedding the fuzzy C-means cluster algorithm into the cycle generative adversarial network (Cycle GAN). Our approach achieves high accuracy and effectiveness in ×400 and ×1,000 Toxoplasma microscopic images. |
format | Online Article Text |
id | pubmed-6989130 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | American Society for Microbiology |
record_format | MEDLINE/PubMed |
spelling | pubmed-69891302020-02-03 Transfer Learning for Toxoplasma gondii Recognition Li, Sen Li, Aijia Molina Lara, Diego Alejandro Gómez Marín, Jorge Enrique Juhas, Mario Zhang, Yang mSystems Research Article Toxoplasma gondii, one of the world’s most common parasites, can infect all types of warm-blooded animals, including one-third of the world’s human population. Most current routine diagnostic methods are costly, time-consuming, and labor-intensive. Although T. gondii can be directly observed under the microscope in tissue or spinal fluid samples, this form of identification is difficult and requires well-trained professionals. Nevertheless, the traditional identification of parasites under the microscope is still performed by a large number of laboratories. Novel, efficient, and reliable methods of T. gondii identification are therefore needed, particularly in developing countries. To this end, we developed a novel transfer learning-based microscopic image recognition method for T. gondii identification. This approach employs the fuzzy cycle generative adversarial network (FCGAN) with transfer learning utilizing knowledge gained by parasitologists that Toxoplasma is banana or crescent shaped. Our approach aims to build connections between microscopic and macroscopic associated objects by embedding the fuzzy C-means cluster algorithm into the cycle generative adversarial network (Cycle GAN). Our approach achieves 93.1% and 94.0% detection accuracy for ×400 and ×1,000 Toxoplasma microscopic images, respectively. We showed the high accuracy and effectiveness of our approach in newly collected unlabeled Toxoplasma microscopic images, compared to other currently available deep learning methods. This novel method for Toxoplasma microscopic image recognition will open a new window for developing cost-effective and scalable deep learning-based diagnostic solutions, potentially enabling broader clinical access in developing countries. IMPORTANCE Toxoplasma gondii, one of the world’s most common parasites, can infect all types of warm-blooded animals, including one-third of the world’s human population. Artificial intelligence (AI) could provide accurate and rapid diagnosis in fighting Toxoplasma. So far, none of the previously reported deep learning methods have attempted to explore the advantages of transfer learning for Toxoplasma detection. The knowledge from parasitologists is that the Toxoplasma parasite is generally banana or crescent shaped. Based on this, we built connections between microscopic and macroscopic associated objects by embedding the fuzzy C-means cluster algorithm into the cycle generative adversarial network (Cycle GAN). Our approach achieves high accuracy and effectiveness in ×400 and ×1,000 Toxoplasma microscopic images. American Society for Microbiology 2020-01-28 /pmc/articles/PMC6989130/ /pubmed/31992631 http://dx.doi.org/10.1128/mSystems.00445-19 Text en Copyright © 2020 Li et al. https://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Research Article Li, Sen Li, Aijia Molina Lara, Diego Alejandro Gómez Marín, Jorge Enrique Juhas, Mario Zhang, Yang Transfer Learning for Toxoplasma gondii Recognition |
title | Transfer Learning for Toxoplasma gondii Recognition |
title_full | Transfer Learning for Toxoplasma gondii Recognition |
title_fullStr | Transfer Learning for Toxoplasma gondii Recognition |
title_full_unstemmed | Transfer Learning for Toxoplasma gondii Recognition |
title_short | Transfer Learning for Toxoplasma gondii Recognition |
title_sort | transfer learning for toxoplasma gondii recognition |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6989130/ https://www.ncbi.nlm.nih.gov/pubmed/31992631 http://dx.doi.org/10.1128/mSystems.00445-19 |
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