Cargando…

NG-Tax 2.0: A Semantic Framework for High-Throughput Amplicon Analysis

NG-Tax 2.0 is a semantic framework for FAIR high-throughput analysis and classification of marker gene amplicon sequences including bacterial and archaeal 16S ribosomal RNA (rRNA), eukaryotic 18S rRNA and ribosomal intergenic transcribed spacer sequences. It can directly use single or merged reads,...

Descripción completa

Detalles Bibliográficos
Autores principales:	Poncheewin, Wasin, Hermes, Gerben D. A., van Dam, Jesse C. J., Koehorst, Jasper J., Smidt, Hauke, Schaap, Peter J.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Frontiers Media S.A. 2020
Materias:	Genetics
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6989550/ https://www.ncbi.nlm.nih.gov/pubmed/32117417 http://dx.doi.org/10.3389/fgene.2019.01366

Ejemplares similares

NG-Tax, a highly accurate and validated pipeline for analysis of 16S rRNA amplicons from complex biomes
por: Ramiro-Garcia, Javier, et al.
Publicado: (2018)

Machine learning approaches to predict the Plant-associated phenotype of Xanthomonas strains
por: te Molder, Dennie, et al.
Publicado: (2021)

SAPP: functional genome annotation and analysis through a semantic framework using FAIR principles
por: Koehorst, Jasper J, et al.
Publicado: (2018)

Assessment of the Accuracy of High-Throughput Sequencing of the ITS1 Region of Neocallimastigomycota for Community Composition Analysis
por: Edwards, Joan E., et al.
Publicado: (2019)

Classification of the plant-associated lifestyle of Pseudomonas strains using genome properties and machine learning
por: Poncheewin, Wasin, et al.
Publicado: (2022)

RDF2Graph a tool to recover, understand and validate the ontology of an RDF resource
por: van Dam, Jesse CJ, et al.
Publicado: (2015)

FAIR data station for lightweight metadata management and validation of omics studies
por: Nijsse, Bart, et al.
Publicado: (2023)

Comparative Genomics Highlights Symbiotic Capacities and High Metabolic Flexibility of the Marine Genus Pseudovibrio
por: Versluis, Dennis, et al.
Publicado: (2018)

Diversity of tryptophan halogenases in sponges of the genus Aplysina
por: Gutleben, Johanna, et al.
Publicado: (2019)

The Empusa code generator and its application to GBOL, an extendable ontology for genome annotation
por: van Dam, Jesse C. J., et al.
Publicado: (2019)

SESAME (SEquence Sorter & AMplicon Explorer): genotyping based on high-throughput multiplex amplicon sequencing
por: Meglécz, Emese, et al.
Publicado: (2011)

Accurate multiplexing and filtering for high-throughput amplicon-sequencing
por: Esling, Philippe, et al.
Publicado: (2015)

AmpliconDuo: A Split-Sample Filtering Protocol for High-Throughput Amplicon Sequencing of Microbial Communities
por: Lange, Anja, et al.
Publicado: (2015)

Host and Environmental Factors Affecting the Intestinal Microbiota in Chickens
por: Kers, Jannigje G., et al.
Publicado: (2018)

Conserved developmental trajectories of the cecal microbiota of broiler chickens in a field study
por: Kers, Jannigje G, et al.
Publicado: (2022)

On the Proton-Bound Noble Gas Dimers (Ng-H-Ng)(+) and (Ng-H-Ng’)(+) (Ng, Ng’ = He-Xe): Relationships between Structure, Stability, and Bonding Character
por: Borocci, Stefano, et al.
Publicado: (2021)

Relative contributions of egg-associated and substrate-associated microorganisms to black soldier fly larval performance and microbiota
por: J. J. Schreven, Stijn, et al.
Publicado: (2021)

Synthetic Sequencing Standards: A Guide to Database Choice for Rumen Microbiota Amplicon Sequencing Analysis
por: Smith, Paul E., et al.
Publicado: (2020)

Comparison of 432 Pseudomonas strains through integration of genomic, functional, metabolic and expression data
por: Koehorst, Jasper J., et al.
Publicado: (2016)

SiNG-PCRseq: Accurate inter-sequence quantification achieved by spiking-in a neighbor genome for competitive PCR amplicon sequencing
por: Oh, Soo A., et al.
Publicado: (2015)

Biomedical Semantics: the Hub for Biomedical Research 2.0
por: Rebholz-Schuhmann, Dietrich, et al.
Publicado: (2010)

High-throughput sequencing of multiple amplicons for barcoding and integrative taxonomy
por: Cruaud, Perrine, et al.
Publicado: (2017)

Digital fragment analysis of short tandem repeats by high‐throughput amplicon sequencing
por: Darby, Brian J., et al.
Publicado: (2016)

Black Soldier Fly Larvae Influence Internal and Substrate Bacterial Community Composition Depending on Substrate Type and Larval Density
por: Schreven, Stijn J. J., et al.
Publicado: (2022)

High throughput human genotyping for variants associated with malarial disease outcomes using custom targeted amplicon sequencing
por: Osborne, Ashley, et al.
Publicado: (2023)

Next Generation-Targeted Amplicon Sequencing (NG-TAS): an optimised protocol and computational pipeline for cost-effective profiling of circulating tumour DNA
por: Gao, Meiling, et al.
Publicado: (2019)

Take care of the environment: housing conditions affect the interplay of nutritional interventions and intestinal microbiota in broiler chickens
por: Kers, Jannigje G., et al.
Publicado: (2019)

The Grapevine and Wine Microbiome: Insights from High-Throughput Amplicon Sequencing
por: Morgan, Horatio H., et al.
Publicado: (2017)

A high-throughput amplicon-based method for estimating outcrossing rates
por: Jantzen, Friederike, et al.
Publicado: (2019)

Free Faecal Water: Analysis of Horse Faecal Microbiota and the Impact of Faecal Microbial Transplantation on Symptom Severity
por: Laustsen, Louise, et al.
Publicado: (2021)

NgR1 and NgR3 are Receptors for Chondroitin Sulfate Proteoglycans
por: Dickendesher, Travis L., et al.
Publicado: (2012)

RELAX NG
por: Van der Vlist, Eric
Publicado: (2004)

Effects of Argonaute on Gene Expression in Thermus thermophilus
por: Swarts, Daan C., et al.
Publicado: (2015)

Assessing the Metabolic Diversity of Streptococcus from a Protein Domain Point of View
por: Saccenti, Edoardo, et al.
Publicado: (2015)

Assessing diversity of the female urine microbiota by high throughput sequencing of 16S rDNA amplicons
por: Siddiqui, Huma, et al.
Publicado: (2011)

Current Routine Testosterone Immunoassays Are Unsuitable for Lowering the General Castration Cutoff Recommendation to <0.7 nmol/l (20 ng/dl)
por: van Rossum, Huub H., et al.
Publicado: (2023)

Cost-efficient high-throughput HLA typing by MiSeq amplicon sequencing
por: Lange, Vinzenz, et al.
Publicado: (2014)

Computational Analysis of AmpSeq Data for Targeted, High-Throughput Genotyping of Amplicons
por: Fresnedo-Ramírez, Jonathan, et al.
Publicado: (2019)

Amplicon-Based High-Throughput Sequencing Method for Genotypic Characterization of Norovirus in Oysters
por: Fitzpatrick, Amy H., et al.
Publicado: (2023)

A high‐throughput amplicon sequencing approach for population‐wide species diversity and composition survey
por: Tay, Wee Tek, et al.
Publicado: (2022)

Cannot write session to /tmp/vufind_sessions/sess_ili7elh5cbhj5jn4uaiikbp669