Cargando…
Development and verification of a nomogram for prediction of recurrence‐free survival in clear cell renal cell carcinoma
Nowadays, gene expression profiling has been widely used in screening out prognostic biomarkers in numerous kinds of carcinoma. Our studies attempt to construct a clinical nomogram which combines risk gene signature and clinical features for individual recurrent risk assessment and offer personalize...
Autores principales: | , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2019
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6991630/ https://www.ncbi.nlm.nih.gov/pubmed/31782902 http://dx.doi.org/10.1111/jcmm.14748 |
_version_ | 1783492693263908864 |
---|---|
author | Chen, Yuanlei Jiang, Shangjun Lu, Zeyi Xue, Dingwei Xia, Liqun Lu, Jieyang Wang, Huan Xu, Liwei Li, Liyang Li, Gonghui |
author_facet | Chen, Yuanlei Jiang, Shangjun Lu, Zeyi Xue, Dingwei Xia, Liqun Lu, Jieyang Wang, Huan Xu, Liwei Li, Liyang Li, Gonghui |
author_sort | Chen, Yuanlei |
collection | PubMed |
description | Nowadays, gene expression profiling has been widely used in screening out prognostic biomarkers in numerous kinds of carcinoma. Our studies attempt to construct a clinical nomogram which combines risk gene signature and clinical features for individual recurrent risk assessment and offer personalized managements for clear cell renal cell carcinoma. A total of 580 differentially expressed genes (DEGs) were identified via microarray. Functional analysis revealed that DEGs are of fundamental importance in ccRCC progression and metastasis. In our study, 338 ccRCC patients were retrospectively analysed and a risk gene signature which composed of 5 genes was obtained from a LASSO Cox regression model. Further analysis revealed that identified risk gene signature could usefully distinguish the patients with poor prognosis in training cohort (hazard ratio [HR] = 3.554, 95% confidence interval [CI] 2.261‐7.472, P < .0001, n = 107). Moreover, the prognostic value of this gene‐signature was independent of clinical features (P = .002). The efficacy of risk gene signature was verified in both internal and external cohorts. The area under receiver operating characteristic curve of this signature was 0.770, 0.765 and 0.774 in the training, testing and external validation cohorts, respectively. Finally, a nomogram was developed for clinicians and did well in the calibration plots. This nomogram based on risk gene signature and clinical features might provide a practical way for recurrence prediction and facilitating personalized managements of ccRCC patients after surgery. |
format | Online Article Text |
id | pubmed-6991630 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-69916302020-02-03 Development and verification of a nomogram for prediction of recurrence‐free survival in clear cell renal cell carcinoma Chen, Yuanlei Jiang, Shangjun Lu, Zeyi Xue, Dingwei Xia, Liqun Lu, Jieyang Wang, Huan Xu, Liwei Li, Liyang Li, Gonghui J Cell Mol Med Original Articles Nowadays, gene expression profiling has been widely used in screening out prognostic biomarkers in numerous kinds of carcinoma. Our studies attempt to construct a clinical nomogram which combines risk gene signature and clinical features for individual recurrent risk assessment and offer personalized managements for clear cell renal cell carcinoma. A total of 580 differentially expressed genes (DEGs) were identified via microarray. Functional analysis revealed that DEGs are of fundamental importance in ccRCC progression and metastasis. In our study, 338 ccRCC patients were retrospectively analysed and a risk gene signature which composed of 5 genes was obtained from a LASSO Cox regression model. Further analysis revealed that identified risk gene signature could usefully distinguish the patients with poor prognosis in training cohort (hazard ratio [HR] = 3.554, 95% confidence interval [CI] 2.261‐7.472, P < .0001, n = 107). Moreover, the prognostic value of this gene‐signature was independent of clinical features (P = .002). The efficacy of risk gene signature was verified in both internal and external cohorts. The area under receiver operating characteristic curve of this signature was 0.770, 0.765 and 0.774 in the training, testing and external validation cohorts, respectively. Finally, a nomogram was developed for clinicians and did well in the calibration plots. This nomogram based on risk gene signature and clinical features might provide a practical way for recurrence prediction and facilitating personalized managements of ccRCC patients after surgery. John Wiley and Sons Inc. 2019-11-29 2020-01 /pmc/articles/PMC6991630/ /pubmed/31782902 http://dx.doi.org/10.1111/jcmm.14748 Text en © 2019 The Authors. Journal of Cellular and Molecular Medicine published by John Wiley & Sons Ltd and Foundation for Cellular and Molecular Medicine. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Original Articles Chen, Yuanlei Jiang, Shangjun Lu, Zeyi Xue, Dingwei Xia, Liqun Lu, Jieyang Wang, Huan Xu, Liwei Li, Liyang Li, Gonghui Development and verification of a nomogram for prediction of recurrence‐free survival in clear cell renal cell carcinoma |
title | Development and verification of a nomogram for prediction of recurrence‐free survival in clear cell renal cell carcinoma |
title_full | Development and verification of a nomogram for prediction of recurrence‐free survival in clear cell renal cell carcinoma |
title_fullStr | Development and verification of a nomogram for prediction of recurrence‐free survival in clear cell renal cell carcinoma |
title_full_unstemmed | Development and verification of a nomogram for prediction of recurrence‐free survival in clear cell renal cell carcinoma |
title_short | Development and verification of a nomogram for prediction of recurrence‐free survival in clear cell renal cell carcinoma |
title_sort | development and verification of a nomogram for prediction of recurrence‐free survival in clear cell renal cell carcinoma |
topic | Original Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6991630/ https://www.ncbi.nlm.nih.gov/pubmed/31782902 http://dx.doi.org/10.1111/jcmm.14748 |
work_keys_str_mv | AT chenyuanlei developmentandverificationofanomogramforpredictionofrecurrencefreesurvivalinclearcellrenalcellcarcinoma AT jiangshangjun developmentandverificationofanomogramforpredictionofrecurrencefreesurvivalinclearcellrenalcellcarcinoma AT luzeyi developmentandverificationofanomogramforpredictionofrecurrencefreesurvivalinclearcellrenalcellcarcinoma AT xuedingwei developmentandverificationofanomogramforpredictionofrecurrencefreesurvivalinclearcellrenalcellcarcinoma AT xialiqun developmentandverificationofanomogramforpredictionofrecurrencefreesurvivalinclearcellrenalcellcarcinoma AT lujieyang developmentandverificationofanomogramforpredictionofrecurrencefreesurvivalinclearcellrenalcellcarcinoma AT wanghuan developmentandverificationofanomogramforpredictionofrecurrencefreesurvivalinclearcellrenalcellcarcinoma AT xuliwei developmentandverificationofanomogramforpredictionofrecurrencefreesurvivalinclearcellrenalcellcarcinoma AT liliyang developmentandverificationofanomogramforpredictionofrecurrencefreesurvivalinclearcellrenalcellcarcinoma AT ligonghui developmentandverificationofanomogramforpredictionofrecurrencefreesurvivalinclearcellrenalcellcarcinoma |