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Development and verification of a nomogram for prediction of recurrence‐free survival in clear cell renal cell carcinoma

Nowadays, gene expression profiling has been widely used in screening out prognostic biomarkers in numerous kinds of carcinoma. Our studies attempt to construct a clinical nomogram which combines risk gene signature and clinical features for individual recurrent risk assessment and offer personalize...

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Autores principales: Chen, Yuanlei, Jiang, Shangjun, Lu, Zeyi, Xue, Dingwei, Xia, Liqun, Lu, Jieyang, Wang, Huan, Xu, Liwei, Li, Liyang, Li, Gonghui
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6991630/
https://www.ncbi.nlm.nih.gov/pubmed/31782902
http://dx.doi.org/10.1111/jcmm.14748
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author Chen, Yuanlei
Jiang, Shangjun
Lu, Zeyi
Xue, Dingwei
Xia, Liqun
Lu, Jieyang
Wang, Huan
Xu, Liwei
Li, Liyang
Li, Gonghui
author_facet Chen, Yuanlei
Jiang, Shangjun
Lu, Zeyi
Xue, Dingwei
Xia, Liqun
Lu, Jieyang
Wang, Huan
Xu, Liwei
Li, Liyang
Li, Gonghui
author_sort Chen, Yuanlei
collection PubMed
description Nowadays, gene expression profiling has been widely used in screening out prognostic biomarkers in numerous kinds of carcinoma. Our studies attempt to construct a clinical nomogram which combines risk gene signature and clinical features for individual recurrent risk assessment and offer personalized managements for clear cell renal cell carcinoma. A total of 580 differentially expressed genes (DEGs) were identified via microarray. Functional analysis revealed that DEGs are of fundamental importance in ccRCC progression and metastasis. In our study, 338 ccRCC patients were retrospectively analysed and a risk gene signature which composed of 5 genes was obtained from a LASSO Cox regression model. Further analysis revealed that identified risk gene signature could usefully distinguish the patients with poor prognosis in training cohort (hazard ratio [HR] = 3.554, 95% confidence interval [CI] 2.261‐7.472, P < .0001, n = 107). Moreover, the prognostic value of this gene‐signature was independent of clinical features (P = .002). The efficacy of risk gene signature was verified in both internal and external cohorts. The area under receiver operating characteristic curve of this signature was 0.770, 0.765 and 0.774 in the training, testing and external validation cohorts, respectively. Finally, a nomogram was developed for clinicians and did well in the calibration plots. This nomogram based on risk gene signature and clinical features might provide a practical way for recurrence prediction and facilitating personalized managements of ccRCC patients after surgery.
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spelling pubmed-69916302020-02-03 Development and verification of a nomogram for prediction of recurrence‐free survival in clear cell renal cell carcinoma Chen, Yuanlei Jiang, Shangjun Lu, Zeyi Xue, Dingwei Xia, Liqun Lu, Jieyang Wang, Huan Xu, Liwei Li, Liyang Li, Gonghui J Cell Mol Med Original Articles Nowadays, gene expression profiling has been widely used in screening out prognostic biomarkers in numerous kinds of carcinoma. Our studies attempt to construct a clinical nomogram which combines risk gene signature and clinical features for individual recurrent risk assessment and offer personalized managements for clear cell renal cell carcinoma. A total of 580 differentially expressed genes (DEGs) were identified via microarray. Functional analysis revealed that DEGs are of fundamental importance in ccRCC progression and metastasis. In our study, 338 ccRCC patients were retrospectively analysed and a risk gene signature which composed of 5 genes was obtained from a LASSO Cox regression model. Further analysis revealed that identified risk gene signature could usefully distinguish the patients with poor prognosis in training cohort (hazard ratio [HR] = 3.554, 95% confidence interval [CI] 2.261‐7.472, P < .0001, n = 107). Moreover, the prognostic value of this gene‐signature was independent of clinical features (P = .002). The efficacy of risk gene signature was verified in both internal and external cohorts. The area under receiver operating characteristic curve of this signature was 0.770, 0.765 and 0.774 in the training, testing and external validation cohorts, respectively. Finally, a nomogram was developed for clinicians and did well in the calibration plots. This nomogram based on risk gene signature and clinical features might provide a practical way for recurrence prediction and facilitating personalized managements of ccRCC patients after surgery. John Wiley and Sons Inc. 2019-11-29 2020-01 /pmc/articles/PMC6991630/ /pubmed/31782902 http://dx.doi.org/10.1111/jcmm.14748 Text en © 2019 The Authors. Journal of Cellular and Molecular Medicine published by John Wiley & Sons Ltd and Foundation for Cellular and Molecular Medicine. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Articles
Chen, Yuanlei
Jiang, Shangjun
Lu, Zeyi
Xue, Dingwei
Xia, Liqun
Lu, Jieyang
Wang, Huan
Xu, Liwei
Li, Liyang
Li, Gonghui
Development and verification of a nomogram for prediction of recurrence‐free survival in clear cell renal cell carcinoma
title Development and verification of a nomogram for prediction of recurrence‐free survival in clear cell renal cell carcinoma
title_full Development and verification of a nomogram for prediction of recurrence‐free survival in clear cell renal cell carcinoma
title_fullStr Development and verification of a nomogram for prediction of recurrence‐free survival in clear cell renal cell carcinoma
title_full_unstemmed Development and verification of a nomogram for prediction of recurrence‐free survival in clear cell renal cell carcinoma
title_short Development and verification of a nomogram for prediction of recurrence‐free survival in clear cell renal cell carcinoma
title_sort development and verification of a nomogram for prediction of recurrence‐free survival in clear cell renal cell carcinoma
topic Original Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6991630/
https://www.ncbi.nlm.nih.gov/pubmed/31782902
http://dx.doi.org/10.1111/jcmm.14748
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