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Systematic construction and validation of an immune prognostic model for lung adenocarcinoma

Lung adenocarcinoma (LUAD), the most common non‐small‐cell lung cancer, is characterized by a dense lymphocytic infiltrate, which indicates that the immune system plays an active role in the development and growth of this cancer. However, no investigations to date have proposed robust models for pre...

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Autores principales: Luo, Chenghan, Lei, Mengyuan, Zhang, Yixia, Zhang, Qian, Li, Lifeng, Lian, Jingyao, Liu, Shasha, Wang, Liping, Pi, Guofu, Zhang, Yi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6991688/
https://www.ncbi.nlm.nih.gov/pubmed/31779055
http://dx.doi.org/10.1111/jcmm.14719
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author Luo, Chenghan
Lei, Mengyuan
Zhang, Yixia
Zhang, Qian
Li, Lifeng
Lian, Jingyao
Liu, Shasha
Wang, Liping
Pi, Guofu
Zhang, Yi
author_facet Luo, Chenghan
Lei, Mengyuan
Zhang, Yixia
Zhang, Qian
Li, Lifeng
Lian, Jingyao
Liu, Shasha
Wang, Liping
Pi, Guofu
Zhang, Yi
author_sort Luo, Chenghan
collection PubMed
description Lung adenocarcinoma (LUAD), the most common non‐small‐cell lung cancer, is characterized by a dense lymphocytic infiltrate, which indicates that the immune system plays an active role in the development and growth of this cancer. However, no investigations to date have proposed robust models for predicting survival outcome for patients with LUAD in terms of tumour immunology. A total of 761 LUAD patients were included in this study, in which the database of The Cancer Genome Atlas (TCGA) was utilized for discovery, and the Gene Expression Omnibus (GEO) database was utilized for validation. Bioinformatics analysis and R language tools were utilized to construct an immune prognostic model and annotate biological functions. Lung adenocarcinoma showed a weakened immune phenotype compared with adjacent normal tissues. Immune‐related gene sets were profiled, an immune prognostic model based on 2 immune genes (ANLN and F2) was developed with the TCGA database to distinguish cases as having a low or high risk of unfavourable prognosis, and the model was verified with the GEO database. The model was prognostically significant in stratified cohorts, including stage I‐II, stage III‐IV and epidermal growth factor receptor (EGFR) mutant subsets, and was considered to be an independent prognostic factor for LUAD. Furthermore, the low‐ and high‐risk groups showed marked differences in tumour‐infiltrating leucocytes, tumour mutation burden, aneuploidy and PD‐L1 expression. In conclusion, an immune prognostic model was proposed for LUAD that is capable of independently identifying patients at high risk for poor survival, suggesting a relationship between local immune status and prognosis.
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spelling pubmed-69916882020-02-03 Systematic construction and validation of an immune prognostic model for lung adenocarcinoma Luo, Chenghan Lei, Mengyuan Zhang, Yixia Zhang, Qian Li, Lifeng Lian, Jingyao Liu, Shasha Wang, Liping Pi, Guofu Zhang, Yi J Cell Mol Med Original Articles Lung adenocarcinoma (LUAD), the most common non‐small‐cell lung cancer, is characterized by a dense lymphocytic infiltrate, which indicates that the immune system plays an active role in the development and growth of this cancer. However, no investigations to date have proposed robust models for predicting survival outcome for patients with LUAD in terms of tumour immunology. A total of 761 LUAD patients were included in this study, in which the database of The Cancer Genome Atlas (TCGA) was utilized for discovery, and the Gene Expression Omnibus (GEO) database was utilized for validation. Bioinformatics analysis and R language tools were utilized to construct an immune prognostic model and annotate biological functions. Lung adenocarcinoma showed a weakened immune phenotype compared with adjacent normal tissues. Immune‐related gene sets were profiled, an immune prognostic model based on 2 immune genes (ANLN and F2) was developed with the TCGA database to distinguish cases as having a low or high risk of unfavourable prognosis, and the model was verified with the GEO database. The model was prognostically significant in stratified cohorts, including stage I‐II, stage III‐IV and epidermal growth factor receptor (EGFR) mutant subsets, and was considered to be an independent prognostic factor for LUAD. Furthermore, the low‐ and high‐risk groups showed marked differences in tumour‐infiltrating leucocytes, tumour mutation burden, aneuploidy and PD‐L1 expression. In conclusion, an immune prognostic model was proposed for LUAD that is capable of independently identifying patients at high risk for poor survival, suggesting a relationship between local immune status and prognosis. John Wiley and Sons Inc. 2019-11-28 2020-01 /pmc/articles/PMC6991688/ /pubmed/31779055 http://dx.doi.org/10.1111/jcmm.14719 Text en © 2019 The Authors. Journal of Cellular and Molecular Medicine published by Foundation for Cellular and Molecular Medicine and John Wiley & Sons Ltd This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Articles
Luo, Chenghan
Lei, Mengyuan
Zhang, Yixia
Zhang, Qian
Li, Lifeng
Lian, Jingyao
Liu, Shasha
Wang, Liping
Pi, Guofu
Zhang, Yi
Systematic construction and validation of an immune prognostic model for lung adenocarcinoma
title Systematic construction and validation of an immune prognostic model for lung adenocarcinoma
title_full Systematic construction and validation of an immune prognostic model for lung adenocarcinoma
title_fullStr Systematic construction and validation of an immune prognostic model for lung adenocarcinoma
title_full_unstemmed Systematic construction and validation of an immune prognostic model for lung adenocarcinoma
title_short Systematic construction and validation of an immune prognostic model for lung adenocarcinoma
title_sort systematic construction and validation of an immune prognostic model for lung adenocarcinoma
topic Original Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6991688/
https://www.ncbi.nlm.nih.gov/pubmed/31779055
http://dx.doi.org/10.1111/jcmm.14719
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