Cargando…

Comprehensive T cell repertoire characterization of non-small cell lung cancer

Immunotherapy targeting T cells is increasingly utilized to treat solid tumors including non-small cell lung cancer (NSCLC). This requires a better understanding of the T cells in the lungs of patients with NSCLC. Here, we report T cell repertoire analysis in a cohort of 236 early-stage NSCLC patien...

Descripción completa

Detalles Bibliográficos
Autores principales: Reuben, Alexandre, Zhang, Jiexin, Chiou, Shin-Heng, Gittelman, Rachel M., Li, Jun, Lee, Won-Chul, Fujimoto, Junya, Behrens, Carmen, Liu, Xiaoke, Wang, Feng, Quek, Kelly, Wang, Chunlin, Kheradmand, Farrah, Chen, Runzhe, Chow, Chi-Wan, Lin, Heather, Bernatchez, Chantale, Jalali, Ali, Hu, Xin, Wu, Chang-Jiun, Eterovic, Agda Karina, Parra, Edwin Roger, Yusko, Erik, Emerson, Ryan, Benzeno, Sharon, Vignali, Marissa, Wu, Xifeng, Ye, Yuanqing, Little, Latasha D., Gumbs, Curtis, Mao, Xizeng, Song, Xingzhi, Tippen, Samantha, Thornton, Rebecca L., Cascone, Tina, Snyder, Alexandra, Wargo, Jennifer A., Herbst, Roy, Swisher, Stephen, Kadara, Humam, Moran, Cesar, Kalhor, Neda, Zhang, Jianhua, Scheet, Paul, Vaporciyan, Ara A., Sepesi, Boris, Gibbons, Don L., Robins, Harlan, Hwu, Patrick, Heymach, John V., Sharma, Padmanee, Allison, James P., Baladandayuthapani, Veera, Lee, Jack J., Davis, Mark M., Wistuba, Ignacio I., Futreal, P. Andrew, Zhang, Jianjun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6992630/
https://www.ncbi.nlm.nih.gov/pubmed/32001676
http://dx.doi.org/10.1038/s41467-019-14273-0
_version_ 1783492870110445568
author Reuben, Alexandre
Zhang, Jiexin
Chiou, Shin-Heng
Gittelman, Rachel M.
Li, Jun
Lee, Won-Chul
Fujimoto, Junya
Behrens, Carmen
Liu, Xiaoke
Wang, Feng
Quek, Kelly
Wang, Chunlin
Kheradmand, Farrah
Chen, Runzhe
Chow, Chi-Wan
Lin, Heather
Bernatchez, Chantale
Jalali, Ali
Hu, Xin
Wu, Chang-Jiun
Eterovic, Agda Karina
Parra, Edwin Roger
Yusko, Erik
Emerson, Ryan
Benzeno, Sharon
Vignali, Marissa
Wu, Xifeng
Ye, Yuanqing
Little, Latasha D.
Gumbs, Curtis
Mao, Xizeng
Song, Xingzhi
Tippen, Samantha
Thornton, Rebecca L.
Cascone, Tina
Snyder, Alexandra
Wargo, Jennifer A.
Herbst, Roy
Swisher, Stephen
Kadara, Humam
Moran, Cesar
Kalhor, Neda
Zhang, Jianhua
Scheet, Paul
Vaporciyan, Ara A.
Sepesi, Boris
Gibbons, Don L.
Robins, Harlan
Hwu, Patrick
Heymach, John V.
Sharma, Padmanee
Allison, James P.
Baladandayuthapani, Veera
Lee, Jack J.
Davis, Mark M.
Wistuba, Ignacio I.
Futreal, P. Andrew
Zhang, Jianjun
author_facet Reuben, Alexandre
Zhang, Jiexin
Chiou, Shin-Heng
Gittelman, Rachel M.
Li, Jun
Lee, Won-Chul
Fujimoto, Junya
Behrens, Carmen
Liu, Xiaoke
Wang, Feng
Quek, Kelly
Wang, Chunlin
Kheradmand, Farrah
Chen, Runzhe
Chow, Chi-Wan
Lin, Heather
Bernatchez, Chantale
Jalali, Ali
Hu, Xin
Wu, Chang-Jiun
Eterovic, Agda Karina
Parra, Edwin Roger
Yusko, Erik
Emerson, Ryan
Benzeno, Sharon
Vignali, Marissa
Wu, Xifeng
Ye, Yuanqing
Little, Latasha D.
Gumbs, Curtis
Mao, Xizeng
Song, Xingzhi
Tippen, Samantha
Thornton, Rebecca L.
Cascone, Tina
Snyder, Alexandra
Wargo, Jennifer A.
Herbst, Roy
Swisher, Stephen
Kadara, Humam
Moran, Cesar
Kalhor, Neda
Zhang, Jianhua
Scheet, Paul
Vaporciyan, Ara A.
Sepesi, Boris
Gibbons, Don L.
Robins, Harlan
Hwu, Patrick
Heymach, John V.
Sharma, Padmanee
Allison, James P.
Baladandayuthapani, Veera
Lee, Jack J.
Davis, Mark M.
Wistuba, Ignacio I.
Futreal, P. Andrew
Zhang, Jianjun
author_sort Reuben, Alexandre
collection PubMed
description Immunotherapy targeting T cells is increasingly utilized to treat solid tumors including non-small cell lung cancer (NSCLC). This requires a better understanding of the T cells in the lungs of patients with NSCLC. Here, we report T cell repertoire analysis in a cohort of 236 early-stage NSCLC patients. T cell repertoire attributes are associated with clinicopathologic features, mutational and immune landscape. A considerable proportion of the most prevalent T cells in tumors are also prevalent in the uninvolved tumor-adjacent lungs and appear specific to shared background mutations or viral infections. Patients with higher T cell repertoire homology between the tumor and uninvolved tumor-adjacent lung, suggesting a less tumor-focused T cell response, exhibit inferior survival. These findings indicate that a concise understanding of antigens and T cells in NSCLC is needed to improve therapeutic efficacy and reduce toxicity with immunotherapy, particularly adoptive T cell therapy.
format Online
Article
Text
id pubmed-6992630
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-69926302020-02-03 Comprehensive T cell repertoire characterization of non-small cell lung cancer Reuben, Alexandre Zhang, Jiexin Chiou, Shin-Heng Gittelman, Rachel M. Li, Jun Lee, Won-Chul Fujimoto, Junya Behrens, Carmen Liu, Xiaoke Wang, Feng Quek, Kelly Wang, Chunlin Kheradmand, Farrah Chen, Runzhe Chow, Chi-Wan Lin, Heather Bernatchez, Chantale Jalali, Ali Hu, Xin Wu, Chang-Jiun Eterovic, Agda Karina Parra, Edwin Roger Yusko, Erik Emerson, Ryan Benzeno, Sharon Vignali, Marissa Wu, Xifeng Ye, Yuanqing Little, Latasha D. Gumbs, Curtis Mao, Xizeng Song, Xingzhi Tippen, Samantha Thornton, Rebecca L. Cascone, Tina Snyder, Alexandra Wargo, Jennifer A. Herbst, Roy Swisher, Stephen Kadara, Humam Moran, Cesar Kalhor, Neda Zhang, Jianhua Scheet, Paul Vaporciyan, Ara A. Sepesi, Boris Gibbons, Don L. Robins, Harlan Hwu, Patrick Heymach, John V. Sharma, Padmanee Allison, James P. Baladandayuthapani, Veera Lee, Jack J. Davis, Mark M. Wistuba, Ignacio I. Futreal, P. Andrew Zhang, Jianjun Nat Commun Article Immunotherapy targeting T cells is increasingly utilized to treat solid tumors including non-small cell lung cancer (NSCLC). This requires a better understanding of the T cells in the lungs of patients with NSCLC. Here, we report T cell repertoire analysis in a cohort of 236 early-stage NSCLC patients. T cell repertoire attributes are associated with clinicopathologic features, mutational and immune landscape. A considerable proportion of the most prevalent T cells in tumors are also prevalent in the uninvolved tumor-adjacent lungs and appear specific to shared background mutations or viral infections. Patients with higher T cell repertoire homology between the tumor and uninvolved tumor-adjacent lung, suggesting a less tumor-focused T cell response, exhibit inferior survival. These findings indicate that a concise understanding of antigens and T cells in NSCLC is needed to improve therapeutic efficacy and reduce toxicity with immunotherapy, particularly adoptive T cell therapy. Nature Publishing Group UK 2020-01-30 /pmc/articles/PMC6992630/ /pubmed/32001676 http://dx.doi.org/10.1038/s41467-019-14273-0 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Reuben, Alexandre
Zhang, Jiexin
Chiou, Shin-Heng
Gittelman, Rachel M.
Li, Jun
Lee, Won-Chul
Fujimoto, Junya
Behrens, Carmen
Liu, Xiaoke
Wang, Feng
Quek, Kelly
Wang, Chunlin
Kheradmand, Farrah
Chen, Runzhe
Chow, Chi-Wan
Lin, Heather
Bernatchez, Chantale
Jalali, Ali
Hu, Xin
Wu, Chang-Jiun
Eterovic, Agda Karina
Parra, Edwin Roger
Yusko, Erik
Emerson, Ryan
Benzeno, Sharon
Vignali, Marissa
Wu, Xifeng
Ye, Yuanqing
Little, Latasha D.
Gumbs, Curtis
Mao, Xizeng
Song, Xingzhi
Tippen, Samantha
Thornton, Rebecca L.
Cascone, Tina
Snyder, Alexandra
Wargo, Jennifer A.
Herbst, Roy
Swisher, Stephen
Kadara, Humam
Moran, Cesar
Kalhor, Neda
Zhang, Jianhua
Scheet, Paul
Vaporciyan, Ara A.
Sepesi, Boris
Gibbons, Don L.
Robins, Harlan
Hwu, Patrick
Heymach, John V.
Sharma, Padmanee
Allison, James P.
Baladandayuthapani, Veera
Lee, Jack J.
Davis, Mark M.
Wistuba, Ignacio I.
Futreal, P. Andrew
Zhang, Jianjun
Comprehensive T cell repertoire characterization of non-small cell lung cancer
title Comprehensive T cell repertoire characterization of non-small cell lung cancer
title_full Comprehensive T cell repertoire characterization of non-small cell lung cancer
title_fullStr Comprehensive T cell repertoire characterization of non-small cell lung cancer
title_full_unstemmed Comprehensive T cell repertoire characterization of non-small cell lung cancer
title_short Comprehensive T cell repertoire characterization of non-small cell lung cancer
title_sort comprehensive t cell repertoire characterization of non-small cell lung cancer
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6992630/
https://www.ncbi.nlm.nih.gov/pubmed/32001676
http://dx.doi.org/10.1038/s41467-019-14273-0
work_keys_str_mv AT reubenalexandre comprehensivetcellrepertoirecharacterizationofnonsmallcelllungcancer
AT zhangjiexin comprehensivetcellrepertoirecharacterizationofnonsmallcelllungcancer
AT chioushinheng comprehensivetcellrepertoirecharacterizationofnonsmallcelllungcancer
AT gittelmanrachelm comprehensivetcellrepertoirecharacterizationofnonsmallcelllungcancer
AT lijun comprehensivetcellrepertoirecharacterizationofnonsmallcelllungcancer
AT leewonchul comprehensivetcellrepertoirecharacterizationofnonsmallcelllungcancer
AT fujimotojunya comprehensivetcellrepertoirecharacterizationofnonsmallcelllungcancer
AT behrenscarmen comprehensivetcellrepertoirecharacterizationofnonsmallcelllungcancer
AT liuxiaoke comprehensivetcellrepertoirecharacterizationofnonsmallcelllungcancer
AT wangfeng comprehensivetcellrepertoirecharacterizationofnonsmallcelllungcancer
AT quekkelly comprehensivetcellrepertoirecharacterizationofnonsmallcelllungcancer
AT wangchunlin comprehensivetcellrepertoirecharacterizationofnonsmallcelllungcancer
AT kheradmandfarrah comprehensivetcellrepertoirecharacterizationofnonsmallcelllungcancer
AT chenrunzhe comprehensivetcellrepertoirecharacterizationofnonsmallcelllungcancer
AT chowchiwan comprehensivetcellrepertoirecharacterizationofnonsmallcelllungcancer
AT linheather comprehensivetcellrepertoirecharacterizationofnonsmallcelllungcancer
AT bernatchezchantale comprehensivetcellrepertoirecharacterizationofnonsmallcelllungcancer
AT jalaliali comprehensivetcellrepertoirecharacterizationofnonsmallcelllungcancer
AT huxin comprehensivetcellrepertoirecharacterizationofnonsmallcelllungcancer
AT wuchangjiun comprehensivetcellrepertoirecharacterizationofnonsmallcelllungcancer
AT eterovicagdakarina comprehensivetcellrepertoirecharacterizationofnonsmallcelllungcancer
AT parraedwinroger comprehensivetcellrepertoirecharacterizationofnonsmallcelllungcancer
AT yuskoerik comprehensivetcellrepertoirecharacterizationofnonsmallcelllungcancer
AT emersonryan comprehensivetcellrepertoirecharacterizationofnonsmallcelllungcancer
AT benzenosharon comprehensivetcellrepertoirecharacterizationofnonsmallcelllungcancer
AT vignalimarissa comprehensivetcellrepertoirecharacterizationofnonsmallcelllungcancer
AT wuxifeng comprehensivetcellrepertoirecharacterizationofnonsmallcelllungcancer
AT yeyuanqing comprehensivetcellrepertoirecharacterizationofnonsmallcelllungcancer
AT littlelatashad comprehensivetcellrepertoirecharacterizationofnonsmallcelllungcancer
AT gumbscurtis comprehensivetcellrepertoirecharacterizationofnonsmallcelllungcancer
AT maoxizeng comprehensivetcellrepertoirecharacterizationofnonsmallcelllungcancer
AT songxingzhi comprehensivetcellrepertoirecharacterizationofnonsmallcelllungcancer
AT tippensamantha comprehensivetcellrepertoirecharacterizationofnonsmallcelllungcancer
AT thorntonrebeccal comprehensivetcellrepertoirecharacterizationofnonsmallcelllungcancer
AT casconetina comprehensivetcellrepertoirecharacterizationofnonsmallcelllungcancer
AT snyderalexandra comprehensivetcellrepertoirecharacterizationofnonsmallcelllungcancer
AT wargojennifera comprehensivetcellrepertoirecharacterizationofnonsmallcelllungcancer
AT herbstroy comprehensivetcellrepertoirecharacterizationofnonsmallcelllungcancer
AT swisherstephen comprehensivetcellrepertoirecharacterizationofnonsmallcelllungcancer
AT kadarahumam comprehensivetcellrepertoirecharacterizationofnonsmallcelllungcancer
AT morancesar comprehensivetcellrepertoirecharacterizationofnonsmallcelllungcancer
AT kalhorneda comprehensivetcellrepertoirecharacterizationofnonsmallcelllungcancer
AT zhangjianhua comprehensivetcellrepertoirecharacterizationofnonsmallcelllungcancer
AT scheetpaul comprehensivetcellrepertoirecharacterizationofnonsmallcelllungcancer
AT vaporciyanaraa comprehensivetcellrepertoirecharacterizationofnonsmallcelllungcancer
AT sepesiboris comprehensivetcellrepertoirecharacterizationofnonsmallcelllungcancer
AT gibbonsdonl comprehensivetcellrepertoirecharacterizationofnonsmallcelllungcancer
AT robinsharlan comprehensivetcellrepertoirecharacterizationofnonsmallcelllungcancer
AT hwupatrick comprehensivetcellrepertoirecharacterizationofnonsmallcelllungcancer
AT heymachjohnv comprehensivetcellrepertoirecharacterizationofnonsmallcelllungcancer
AT sharmapadmanee comprehensivetcellrepertoirecharacterizationofnonsmallcelllungcancer
AT allisonjamesp comprehensivetcellrepertoirecharacterizationofnonsmallcelllungcancer
AT baladandayuthapaniveera comprehensivetcellrepertoirecharacterizationofnonsmallcelllungcancer
AT leejackj comprehensivetcellrepertoirecharacterizationofnonsmallcelllungcancer
AT davismarkm comprehensivetcellrepertoirecharacterizationofnonsmallcelllungcancer
AT wistubaignacioi comprehensivetcellrepertoirecharacterizationofnonsmallcelllungcancer
AT futrealpandrew comprehensivetcellrepertoirecharacterizationofnonsmallcelllungcancer
AT zhangjianjun comprehensivetcellrepertoirecharacterizationofnonsmallcelllungcancer