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Comprehensive T cell repertoire characterization of non-small cell lung cancer
Immunotherapy targeting T cells is increasingly utilized to treat solid tumors including non-small cell lung cancer (NSCLC). This requires a better understanding of the T cells in the lungs of patients with NSCLC. Here, we report T cell repertoire analysis in a cohort of 236 early-stage NSCLC patien...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6992630/ https://www.ncbi.nlm.nih.gov/pubmed/32001676 http://dx.doi.org/10.1038/s41467-019-14273-0 |
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author | Reuben, Alexandre Zhang, Jiexin Chiou, Shin-Heng Gittelman, Rachel M. Li, Jun Lee, Won-Chul Fujimoto, Junya Behrens, Carmen Liu, Xiaoke Wang, Feng Quek, Kelly Wang, Chunlin Kheradmand, Farrah Chen, Runzhe Chow, Chi-Wan Lin, Heather Bernatchez, Chantale Jalali, Ali Hu, Xin Wu, Chang-Jiun Eterovic, Agda Karina Parra, Edwin Roger Yusko, Erik Emerson, Ryan Benzeno, Sharon Vignali, Marissa Wu, Xifeng Ye, Yuanqing Little, Latasha D. Gumbs, Curtis Mao, Xizeng Song, Xingzhi Tippen, Samantha Thornton, Rebecca L. Cascone, Tina Snyder, Alexandra Wargo, Jennifer A. Herbst, Roy Swisher, Stephen Kadara, Humam Moran, Cesar Kalhor, Neda Zhang, Jianhua Scheet, Paul Vaporciyan, Ara A. Sepesi, Boris Gibbons, Don L. Robins, Harlan Hwu, Patrick Heymach, John V. Sharma, Padmanee Allison, James P. Baladandayuthapani, Veera Lee, Jack J. Davis, Mark M. Wistuba, Ignacio I. Futreal, P. Andrew Zhang, Jianjun |
author_facet | Reuben, Alexandre Zhang, Jiexin Chiou, Shin-Heng Gittelman, Rachel M. Li, Jun Lee, Won-Chul Fujimoto, Junya Behrens, Carmen Liu, Xiaoke Wang, Feng Quek, Kelly Wang, Chunlin Kheradmand, Farrah Chen, Runzhe Chow, Chi-Wan Lin, Heather Bernatchez, Chantale Jalali, Ali Hu, Xin Wu, Chang-Jiun Eterovic, Agda Karina Parra, Edwin Roger Yusko, Erik Emerson, Ryan Benzeno, Sharon Vignali, Marissa Wu, Xifeng Ye, Yuanqing Little, Latasha D. Gumbs, Curtis Mao, Xizeng Song, Xingzhi Tippen, Samantha Thornton, Rebecca L. Cascone, Tina Snyder, Alexandra Wargo, Jennifer A. Herbst, Roy Swisher, Stephen Kadara, Humam Moran, Cesar Kalhor, Neda Zhang, Jianhua Scheet, Paul Vaporciyan, Ara A. Sepesi, Boris Gibbons, Don L. Robins, Harlan Hwu, Patrick Heymach, John V. Sharma, Padmanee Allison, James P. Baladandayuthapani, Veera Lee, Jack J. Davis, Mark M. Wistuba, Ignacio I. Futreal, P. Andrew Zhang, Jianjun |
author_sort | Reuben, Alexandre |
collection | PubMed |
description | Immunotherapy targeting T cells is increasingly utilized to treat solid tumors including non-small cell lung cancer (NSCLC). This requires a better understanding of the T cells in the lungs of patients with NSCLC. Here, we report T cell repertoire analysis in a cohort of 236 early-stage NSCLC patients. T cell repertoire attributes are associated with clinicopathologic features, mutational and immune landscape. A considerable proportion of the most prevalent T cells in tumors are also prevalent in the uninvolved tumor-adjacent lungs and appear specific to shared background mutations or viral infections. Patients with higher T cell repertoire homology between the tumor and uninvolved tumor-adjacent lung, suggesting a less tumor-focused T cell response, exhibit inferior survival. These findings indicate that a concise understanding of antigens and T cells in NSCLC is needed to improve therapeutic efficacy and reduce toxicity with immunotherapy, particularly adoptive T cell therapy. |
format | Online Article Text |
id | pubmed-6992630 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-69926302020-02-03 Comprehensive T cell repertoire characterization of non-small cell lung cancer Reuben, Alexandre Zhang, Jiexin Chiou, Shin-Heng Gittelman, Rachel M. Li, Jun Lee, Won-Chul Fujimoto, Junya Behrens, Carmen Liu, Xiaoke Wang, Feng Quek, Kelly Wang, Chunlin Kheradmand, Farrah Chen, Runzhe Chow, Chi-Wan Lin, Heather Bernatchez, Chantale Jalali, Ali Hu, Xin Wu, Chang-Jiun Eterovic, Agda Karina Parra, Edwin Roger Yusko, Erik Emerson, Ryan Benzeno, Sharon Vignali, Marissa Wu, Xifeng Ye, Yuanqing Little, Latasha D. Gumbs, Curtis Mao, Xizeng Song, Xingzhi Tippen, Samantha Thornton, Rebecca L. Cascone, Tina Snyder, Alexandra Wargo, Jennifer A. Herbst, Roy Swisher, Stephen Kadara, Humam Moran, Cesar Kalhor, Neda Zhang, Jianhua Scheet, Paul Vaporciyan, Ara A. Sepesi, Boris Gibbons, Don L. Robins, Harlan Hwu, Patrick Heymach, John V. Sharma, Padmanee Allison, James P. Baladandayuthapani, Veera Lee, Jack J. Davis, Mark M. Wistuba, Ignacio I. Futreal, P. Andrew Zhang, Jianjun Nat Commun Article Immunotherapy targeting T cells is increasingly utilized to treat solid tumors including non-small cell lung cancer (NSCLC). This requires a better understanding of the T cells in the lungs of patients with NSCLC. Here, we report T cell repertoire analysis in a cohort of 236 early-stage NSCLC patients. T cell repertoire attributes are associated with clinicopathologic features, mutational and immune landscape. A considerable proportion of the most prevalent T cells in tumors are also prevalent in the uninvolved tumor-adjacent lungs and appear specific to shared background mutations or viral infections. Patients with higher T cell repertoire homology between the tumor and uninvolved tumor-adjacent lung, suggesting a less tumor-focused T cell response, exhibit inferior survival. These findings indicate that a concise understanding of antigens and T cells in NSCLC is needed to improve therapeutic efficacy and reduce toxicity with immunotherapy, particularly adoptive T cell therapy. Nature Publishing Group UK 2020-01-30 /pmc/articles/PMC6992630/ /pubmed/32001676 http://dx.doi.org/10.1038/s41467-019-14273-0 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Reuben, Alexandre Zhang, Jiexin Chiou, Shin-Heng Gittelman, Rachel M. Li, Jun Lee, Won-Chul Fujimoto, Junya Behrens, Carmen Liu, Xiaoke Wang, Feng Quek, Kelly Wang, Chunlin Kheradmand, Farrah Chen, Runzhe Chow, Chi-Wan Lin, Heather Bernatchez, Chantale Jalali, Ali Hu, Xin Wu, Chang-Jiun Eterovic, Agda Karina Parra, Edwin Roger Yusko, Erik Emerson, Ryan Benzeno, Sharon Vignali, Marissa Wu, Xifeng Ye, Yuanqing Little, Latasha D. Gumbs, Curtis Mao, Xizeng Song, Xingzhi Tippen, Samantha Thornton, Rebecca L. Cascone, Tina Snyder, Alexandra Wargo, Jennifer A. Herbst, Roy Swisher, Stephen Kadara, Humam Moran, Cesar Kalhor, Neda Zhang, Jianhua Scheet, Paul Vaporciyan, Ara A. Sepesi, Boris Gibbons, Don L. Robins, Harlan Hwu, Patrick Heymach, John V. Sharma, Padmanee Allison, James P. Baladandayuthapani, Veera Lee, Jack J. Davis, Mark M. Wistuba, Ignacio I. Futreal, P. Andrew Zhang, Jianjun Comprehensive T cell repertoire characterization of non-small cell lung cancer |
title | Comprehensive T cell repertoire characterization of non-small cell lung cancer |
title_full | Comprehensive T cell repertoire characterization of non-small cell lung cancer |
title_fullStr | Comprehensive T cell repertoire characterization of non-small cell lung cancer |
title_full_unstemmed | Comprehensive T cell repertoire characterization of non-small cell lung cancer |
title_short | Comprehensive T cell repertoire characterization of non-small cell lung cancer |
title_sort | comprehensive t cell repertoire characterization of non-small cell lung cancer |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6992630/ https://www.ncbi.nlm.nih.gov/pubmed/32001676 http://dx.doi.org/10.1038/s41467-019-14273-0 |
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