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Combining Machine Learning and Metabolomics to Identify Weight Gain Biomarkers

Weight gain is a metabolic disorder that often culminates in the development of obesity and other comorbidities such as diabetes. Obesity is characterized by the development of a chronic, subclinical systemic inflammation, and is regarded as a remarkably important factor that contributes to the deve...

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Autores principales: Dias-Audibert, Flávia Luísa, Navarro, Luiz Claudio, de Oliveira, Diogo Noin, Delafiori, Jeany, Melo, Carlos Fernando Odir Rodrigues, Guerreiro, Tatiane Melina, Rosa, Flávia Troncon, Petenuci, Diego Lima, Watanabe, Maria Angelica Ehara, Velloso, Licio Augusto, Rocha, Anderson Rezende, Catharino, Rodrigo Ramos
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6993102/
https://www.ncbi.nlm.nih.gov/pubmed/32039191
http://dx.doi.org/10.3389/fbioe.2020.00006
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author Dias-Audibert, Flávia Luísa
Navarro, Luiz Claudio
de Oliveira, Diogo Noin
Delafiori, Jeany
Melo, Carlos Fernando Odir Rodrigues
Guerreiro, Tatiane Melina
Rosa, Flávia Troncon
Petenuci, Diego Lima
Watanabe, Maria Angelica Ehara
Velloso, Licio Augusto
Rocha, Anderson Rezende
Catharino, Rodrigo Ramos
author_facet Dias-Audibert, Flávia Luísa
Navarro, Luiz Claudio
de Oliveira, Diogo Noin
Delafiori, Jeany
Melo, Carlos Fernando Odir Rodrigues
Guerreiro, Tatiane Melina
Rosa, Flávia Troncon
Petenuci, Diego Lima
Watanabe, Maria Angelica Ehara
Velloso, Licio Augusto
Rocha, Anderson Rezende
Catharino, Rodrigo Ramos
author_sort Dias-Audibert, Flávia Luísa
collection PubMed
description Weight gain is a metabolic disorder that often culminates in the development of obesity and other comorbidities such as diabetes. Obesity is characterized by the development of a chronic, subclinical systemic inflammation, and is regarded as a remarkably important factor that contributes to the development of such comorbidities. Therefore, laboratory methods that allow the identification of subjects at higher risk for severe weight-associated morbidity are of utter importance, considering the health, and safety of populations. This contribution analyzed the plasma of 180 Brazilian individuals, equally divided into a eutrophic control group and case group, to assess the presence of biomarkers related to weight gain, aiming at characterizing the phenotype of this population. Samples were analyzed by mass spectrometry and most discriminant features were determined by a machine learning approach using Random Forest algorithm. Five biomarkers related to the pathogenesis and chronicity of inflammation in weight gain were identified. Two metabolites of arachidonic acid were upregulated in the case group, indicating the presence of inflammation, as well as two other molecules related to dysfunctions in the cycle of nitric oxide (NO) and increase in superoxide production. Finally, a fifth case group marker observed in this study may indicate the trigger for diabetes in overweight and obesity individuals. The use of mass spectrometry combined with machine learning analyses to prospect and characterize biomarkers associated with weight gain will pave the way for elucidating potential therapeutic and prognostic targets.
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spelling pubmed-69931022020-02-07 Combining Machine Learning and Metabolomics to Identify Weight Gain Biomarkers Dias-Audibert, Flávia Luísa Navarro, Luiz Claudio de Oliveira, Diogo Noin Delafiori, Jeany Melo, Carlos Fernando Odir Rodrigues Guerreiro, Tatiane Melina Rosa, Flávia Troncon Petenuci, Diego Lima Watanabe, Maria Angelica Ehara Velloso, Licio Augusto Rocha, Anderson Rezende Catharino, Rodrigo Ramos Front Bioeng Biotechnol Bioengineering and Biotechnology Weight gain is a metabolic disorder that often culminates in the development of obesity and other comorbidities such as diabetes. Obesity is characterized by the development of a chronic, subclinical systemic inflammation, and is regarded as a remarkably important factor that contributes to the development of such comorbidities. Therefore, laboratory methods that allow the identification of subjects at higher risk for severe weight-associated morbidity are of utter importance, considering the health, and safety of populations. This contribution analyzed the plasma of 180 Brazilian individuals, equally divided into a eutrophic control group and case group, to assess the presence of biomarkers related to weight gain, aiming at characterizing the phenotype of this population. Samples were analyzed by mass spectrometry and most discriminant features were determined by a machine learning approach using Random Forest algorithm. Five biomarkers related to the pathogenesis and chronicity of inflammation in weight gain were identified. Two metabolites of arachidonic acid were upregulated in the case group, indicating the presence of inflammation, as well as two other molecules related to dysfunctions in the cycle of nitric oxide (NO) and increase in superoxide production. Finally, a fifth case group marker observed in this study may indicate the trigger for diabetes in overweight and obesity individuals. The use of mass spectrometry combined with machine learning analyses to prospect and characterize biomarkers associated with weight gain will pave the way for elucidating potential therapeutic and prognostic targets. Frontiers Media S.A. 2020-01-24 /pmc/articles/PMC6993102/ /pubmed/32039191 http://dx.doi.org/10.3389/fbioe.2020.00006 Text en Copyright © 2020 Dias-Audibert, Navarro, de Oliveira, Delafiori, Melo, Guerreiro, Rosa, Petenuci, Watanabe, Velloso, Rocha and Catharino. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Bioengineering and Biotechnology
Dias-Audibert, Flávia Luísa
Navarro, Luiz Claudio
de Oliveira, Diogo Noin
Delafiori, Jeany
Melo, Carlos Fernando Odir Rodrigues
Guerreiro, Tatiane Melina
Rosa, Flávia Troncon
Petenuci, Diego Lima
Watanabe, Maria Angelica Ehara
Velloso, Licio Augusto
Rocha, Anderson Rezende
Catharino, Rodrigo Ramos
Combining Machine Learning and Metabolomics to Identify Weight Gain Biomarkers
title Combining Machine Learning and Metabolomics to Identify Weight Gain Biomarkers
title_full Combining Machine Learning and Metabolomics to Identify Weight Gain Biomarkers
title_fullStr Combining Machine Learning and Metabolomics to Identify Weight Gain Biomarkers
title_full_unstemmed Combining Machine Learning and Metabolomics to Identify Weight Gain Biomarkers
title_short Combining Machine Learning and Metabolomics to Identify Weight Gain Biomarkers
title_sort combining machine learning and metabolomics to identify weight gain biomarkers
topic Bioengineering and Biotechnology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6993102/
https://www.ncbi.nlm.nih.gov/pubmed/32039191
http://dx.doi.org/10.3389/fbioe.2020.00006
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