Cargando…

Complete plastid genome sequences of two species of the Neotropical genus Brunellia (Brunelliaceae)

Here we present the first two complete plastid genomes for Brunelliaceae, a Neotropical family with a single genus, Brunellia. We surveyed the entire plastid genome in order to find variable cpDNA regions for further phylogenetic analyses across the family. We sampled morphologically different speci...

Descripción completa

Detalles Bibliográficos
Autores principales:	Valencia-D, Janice, Murillo-A, José, Orozco, Clara Inés, Parra-O, Carlos, Neubig, Kurt M.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	PeerJ Inc. 2020
Materias:	Bioinformatics
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6993752/ https://www.ncbi.nlm.nih.gov/pubmed/32025370 http://dx.doi.org/10.7717/peerj.8392

Ejemplares similares

The first complete plastid genomes of Melastomataceae are highly structurally conserved
por: Reginato, Marcelo, et al.
Publicado: (2016)

Comparative analysis of the complete chloroplast genomes from six Neotropical species of Myrteae (Myrtaceae)
por: Rodrigues, Nureyev F., et al.
Publicado: (2020)

Worldwide co-occurrence analysis of 17 species of the genus Brachypodium using data mining
por: Orozco-Arias, Simon, et al.
Publicado: (2019)

Dumpster diving for diatom plastid 16S rRNA genes
por: Bonfantine, Krista L., et al.
Publicado: (2021)

Molecular relationships of Campomanesia xanthocarpa within Myrtaceae based on the complete plastome sequence and on the plastid ycf2 gene
por: Machado, Lilian de Oliveira, et al.
Publicado: (2020)

Complete chloroplast genome sequence of the mangrove species Kandelia obovata and comparative analyses with related species
por: Yang, Yong, et al.
Publicado: (2019)

The complete mitochondrial genome of the threatened Neotropical catfish Lophiosilurus alexandri (Silurifomes: Pseudopimelodidae) and phylogenomic analysis indicate monophyly of Pimelodoidea
por: Carvalho, Daniel Cardoso, et al.
Publicado: (2016)

Complete chloroplast genomes of medicinally important Teucrium species and comparative analyses with related species from Lamiaceae
por: Khan, Arif, et al.
Publicado: (2019)

A practical guide to build de-novo assemblies for single tissues of non-model organisms: the example of a Neotropical frog
por: Montero-Mendieta, Santiago, et al.
Publicado: (2017)

PredictION: a predictive model to establish the performance of Oxford sequencing reads of SARS-CoV-2
por: Valencia-Valencia, David E., et al.
Publicado: (2022)

Telomeric small RNAs in the genus Caenorhabditis
por: Frenk, Stephen, et al.
Publicado: (2019)

The complete chloroplast genome of Cinnamomum camphora and its comparison with related Lauraceae species
por: Chen, Caihui, et al.
Publicado: (2017)

Genetic evidence for a species complex within the piranha Serrasalmus maculatus (Characiformes, Serrasalmidae) from three Neotropical river basins based on mitochondrial DNA sequences
por: Bignotto, Thaís Souto, et al.
Publicado: (2020)

Complete plastome sequence of Iodes cirrhosa Turcz., the first in the Icacinaceae, comparative genomic analyses and possible split of Idoes species in response to climate changes
por: Wang, Liqiang, et al.
Publicado: (2019)

Comparative genomics of Synechococcus and proposal of the new genus Parasynechococcus
por: Coutinho, Felipe, et al.
Publicado: (2016)

Plastid transit peptides—where do they come from and where do they all belong? Multi-genome and pan-genomic assessment of chloroplast transit peptide evolution
por: Christian, Ryan W., et al.
Publicado: (2020)

Complet+: a computationally scalable method to improve completeness of large-scale protein sequence clustering
por: Nguyen, Rachel, et al.
Publicado: (2023)

Middle Pleistocene protein sequences from the rhinoceros genus Stephanorhinus and the phylogeny of extant and extinct Middle/Late Pleistocene Rhinocerotidae
por: Welker, Frido, et al.
Publicado: (2017)

The complete chloroplast genome sequences of three Spondias species reveal close relationship among the species
por: Santos, Vanessa, et al.
Publicado: (2019)

Comparative Plastid Genomics of Neotropical Bulbophyllum (Orchidaceae; Epidendroideae)
por: Zavala-Páez, Michelle, et al.
Publicado: (2020)

The complete chloroplast genome sequence of Gynostemma yixingense and comparative analysis with congeneric species
por: Wang, Long, et al.
Publicado: (2020)

The complete chloroplast genome of Dendrobium nobile, an endangered medicinal orchid from north-east India and its comparison with related Dendrobium species
por: Konhar, Ruchishree, et al.
Publicado: (2019)

Unexpected cross-species contamination in genome sequencing projects
por: Merchant, Samier, et al.
Publicado: (2014)

Assembly and comparative analysis of complete mitochondrial genome sequence of an economic plant Salix suchowensis
por: Ye, Ning, et al.
Publicado: (2017)

Characterization and complete genome sequence of Privateer, a highly prolate Proteus mirabilis podophage
por: Corban, James E., et al.
Publicado: (2021)

Taxonomic evaluation of selected Ganoderma species and database sequence validation
por: Jargalmaa, Suldbold, et al.
Publicado: (2017)

Intragenomic polymorphisms among high-copy loci: a genus-wide study of nuclear ribosomal DNA in Asclepias (Apocynaceae)
por: Weitemier, Kevin, et al.
Publicado: (2015)

Analysis of five complete genome sequences for members of the class Peribacteria in the recently recognized Peregrinibacteria bacterial phylum
por: Anantharaman, Karthik, et al.
Publicado: (2016)

Coleoptera genome and transcriptome sequences reveal numerous differences in neuropeptide signaling between species
por: Veenstra, Jan A.
Publicado: (2019)

De novo species identification using 16S rRNA gene nanopore sequencing
por: Angell, Inga Leena, et al.
Publicado: (2020)

Plastome sequences help to improve the systematic position of trinerved Lindera species in the family Lauraceae
por: Tian, Xiangyu, et al.
Publicado: (2019)

Taxonomic evaluation of Xylodon (Hymenochaetales, Basidiomycota) in Korea and sequence verification of the corresponding species in GenBank
por: Cho, Yoonhee, et al.
Publicado: (2021)

16S-ITGDB: An Integrated Database for Improving Species Classification of Prokaryotic 16S Ribosomal RNA Sequences
por: Hsieh, Yu-Peng, et al.
Publicado: (2022)

Kullback Leibler divergence in complete bacterial and phage genomes
por: Akhter, Sajia, et al.
Publicado: (2017)

The species of the Neotropical genus Fractipons Townes, 1970 (Hymenoptera, Ichneumonidae, Cryptinae)
por: Bordera, Santiago, et al.
Publicado: (2011)

The single-species metagenome: subtyping Staphylococcus aureus core genome sequences from shotgun metagenomic data
por: Joseph, Sandeep J., et al.
Publicado: (2016)

ConFindr: rapid detection of intraspecies and cross-species contamination in bacterial whole-genome sequence data
por: Low, Andrew J., et al.
Publicado: (2019)

Complete plastid genome sequences of Abeliophyllum distichum Nakai (Oleaceae), a Korea endemic genus
por: Kim, Hoe-Won, et al.
Publicado: (2016)

Complete plastid genome sequences of Coreanomecon hylomeconoides Nakai (Papaveraceae), a Korea endemic genus
por: Kim, Hoe-Won, et al.
Publicado: (2016)

An integrated pipeline for next generation sequencing and annotation of the complete mitochondrial genome of the giant intestinal fluke, Fasciolopsis buski (Lankester, 1857) Looss, 1899
por: Biswal, Devendra Kumar, et al.
Publicado: (2013)

Cannot write session to /tmp/vufind_sessions/sess_7p6n80mf8605hhoqq340qjvemg