Cargando…

Developing a scalable FHIR-based clinical data normalization pipeline for standardizing and integrating unstructured and structured electronic health record data

OBJECTIVE: To design, develop, and evaluate a scalable clinical data normalization pipeline for standardizing unstructured electronic health record (EHR) data leveraging the HL7 Fast Healthcare Interoperability Resources (FHIR) specification. METHODS: We established an FHIR-based clinical data norma...

Descripción completa

Detalles Bibliográficos
Autores principales:	Hong, Na, Wen, Andrew, Shen, Feichen, Sohn, Sunghwan, Wang, Chen, Liu, Hongfang, Jiang, Guoqian
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2019
Materias:	Research and Applications
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6993992/ https://www.ncbi.nlm.nih.gov/pubmed/32025655 http://dx.doi.org/10.1093/jamiaopen/ooz056

Ejemplares similares

Integrating Structured and Unstructured EHR Data Using an FHIR-based Type System: A Case Study with Medication Data
por: Hong, Na, et al.
Publicado: (2018)

SMART on FHIR: a standards-based, interoperable apps platform for electronic health records
por: Mandel, Joshua C, et al.
Publicado: (2016)

A Standardized Clinical Data Harmonization Pipeline for Scalable AI Application Deployment (FHIR-DHP): Validation and Usability Study
por: Williams, Elena, et al.
Publicado: (2023)

Developing an FHIR-Based Computational Pipeline for Automatic Population of Case Report Forms for Colorectal Cancer Clinical Trials Using Electronic Health Records
por: Zong, Nansu, et al.
Publicado: (2020)

Constructing co-occurrence network embeddings to assist association extraction for COVID-19 and other coronavirus infectious diseases
por: Oniani, David, et al.
Publicado: (2020)

Automated identification of unstandardized medication data: a scalable and flexible data standardization pipeline using RxNorm on GEMINI multicenter hospital data
por: Waters, Riley, et al.
Publicado: (2023)

Development and application of pharmacological statin-associated muscle symptoms phenotyping algorithms using structured and unstructured electronic health records data
por: Sun, Boguang, et al.
Publicado: (2023)

Scdrake: a reproducible and scalable pipeline for scRNA-seq data analysis
por: Kubovčiak, Jan, et al.
Publicado: (2023)

A cloud-based pipeline for analysis of FHIR and long-read data
por: Dunn, Tim, et al.
Publicado: (2023)

FHIR-Ontop-OMOP: Building clinical knowledge graphs in FHIR RDF with the OMOP Common data Model
por: Xiao, Guohui, et al.
Publicado: (2022)

The SMART Text2FHIR Pipeline
por: Miller, Timothy A., et al.
Publicado: (2023)

Development and assessment of a natural language processing model to identify residential instability in electronic health records’ unstructured data: a comparison of 3 integrated healthcare delivery systems
por: Hatef, Elham, et al.
Publicado: (2022)

DNAscan2: a versatile, scalable, and user-friendly analysis pipeline for human next-generation sequencing data
por: Marriott, Heather, et al.
Publicado: (2023)

Determining prescriptions in electronic healthcare record data: methods for development of standardized, reproducible drug codelists
por: Graul, Emily L, et al.
Publicado: (2023)

Interoperability with multiple Fast Healthcare Interoperability Resources (FHIR(®)) profiles and versions
por: Kramer, Mark A, et al.
Publicado: (2023)

Evaluation of patient-level retrieval from electronic health record data for a cohort discovery task
por: Chamberlin, Steven R, et al.
Publicado: (2020)

FHIR-PYrate: a data science friendly Python package to query FHIR servers
por: Hosch, René, et al.
Publicado: (2023)

Hi-Corrector: a fast, scalable and memory-efficient package for normalizing large-scale Hi-C data
por: Li, Wenyuan, et al.
Publicado: (2015)

Leveraging unstructured data to identify hereditary angioedema patients in electronic medical records
por: Brouwer, Emily S., et al.
Publicado: (2021)

Design and development of Referrals Automation, a SMART on FHIR solution to improve patient access to specialty care
por: Odisho, Anobel Y, et al.
Publicado: (2020)

Introducing HL7 FHIR Genomics Operations: a developer-friendly approach to genomics-EHR integration
por: Dolin, Robert H, et al.
Publicado: (2022)

Transforming Healthcare Analytics with FHIR: A Framework for Standardizing and Analyzing Clinical Data
por: Ayaz, Muhammad, et al.
Publicado: (2023)

Striking a match between FHIR‐based patient data and FHIR‐based eligibility criteria
por: Alper, Brian S., et al.
Publicado: (2023)

Designing an openEHR-Based Pipeline for Extracting and Standardizing Unstructured Clinical Data Using Natural Language Processing
por: Wulff, Antje, et al.
Publicado: (2020)

Test collections for electronic health record-based clinical information retrieval
por: Wang, Yanshan, et al.
Publicado: (2019)

FastSpar: rapid and scalable correlation estimation for compositional data
por: Watts, Stephen C, et al.
Publicado: (2019)

Utilization of Electronic Medical Records and Biomedical Literature to Support the Diagnosis of Rare Diseases Using Data Fusion and Collaborative Filtering Approaches
por: Shen, Feichen, et al.
Publicado: (2018)

shortran: a pipeline for small RNA-seq data analysis
por: Gupta, Vikas, et al.
Publicado: (2012)

A pipeline for RNA-seq data processing and quality assessment
por: Goncalves, Angela, et al.
Publicado: (2011)

TIminer: NGS data mining pipeline for cancer immunology and immunotherapy
por: Tappeiner, Elias, et al.
Publicado: (2017)

A pipeline for the rapid collection of color data from photographs
por: Luong, Yvonne, et al.
Publicado: (2023)

Drug Normalization for Cancer Therapeutic and Druggable Genome Target Discovery
por: Jiang, Guoqian, et al.
Publicado: (2015)

SparkINFERNO: a scalable high-throughput pipeline for inferring molecular mechanisms of non-coding genetic variants
por: Kuksa, Pavel P, et al.
Publicado: (2020)

Formal representation of patients’ care context data: the path to improving the electronic health record
por: Colicchio, Tiago K, et al.
Publicado: (2020)

FIBER: enabling flexible retrieval of electronic health records data for clinical predictive modeling
por: Datta, Suparno, et al.
Publicado: (2021)

Cleaning of anthropometric data from PCORnet electronic health records using automated algorithms
por: Lin, Pi-I D, et al.
Publicado: (2022)

Ascertainment of Aspirin Exposure Using Structured and Unstructured Large-scale Electronic Health Record Data
por: Bustamante, Ranier, et al.
Publicado: (2019)

Multiscale classification of heart failure phenotypes by unsupervised clustering of unstructured electronic medical record data
por: Nagamine, Tasha, et al.
Publicado: (2020)

Building an Electronic Medical Record System Exchanged in FHIR Format and Its Visual Presentation
por: Liu, Tz-Jie, et al.
Publicado: (2023)

Democratizing EHR analyses with FIDDLE: a flexible data-driven preprocessing pipeline for structured clinical data
por: Tang, Shengpu, et al.
Publicado: (2020)

Cannot write session to /tmp/vufind_sessions/sess_p0g00fimcmdqgk8ojnomfd72mi