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Validation of extracellular miRNA quantification in blood samples using RT‐qPCR

Extracellular microRNAs (miRs) have been proposed as important blood‐based biomarkers for several diseases. Contrary to proteins and other RNA classes, miRs are stable and easily detectable in body fluids. In this respect, miRs represent a perfect candidate for minimal invasive biomarkers which can...

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Autores principales: Fauth, Maria, Hegewald, Anett B., Schmitz, Lisa, Krone, Dorothee J., Saul, Meike J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6996320/
https://www.ncbi.nlm.nih.gov/pubmed/32123845
http://dx.doi.org/10.1096/fba.2019-00018
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author Fauth, Maria
Hegewald, Anett B.
Schmitz, Lisa
Krone, Dorothee J.
Saul, Meike J.
author_facet Fauth, Maria
Hegewald, Anett B.
Schmitz, Lisa
Krone, Dorothee J.
Saul, Meike J.
author_sort Fauth, Maria
collection PubMed
description Extracellular microRNAs (miRs) have been proposed as important blood‐based biomarkers for several diseases. Contrary to proteins and other RNA classes, miRs are stable and easily detectable in body fluids. In this respect, miRs represent a perfect candidate for minimal invasive biomarkers which can hopefully become a complement for invasive histological examinations of tumor tissue. Despite the high number of miR biomarker studies, the specificity and reproducibility of these studies is missing. Therefore, the standardization of pre‐analytical and analytical methods is urgently needed. Here, we validated miR analysis for RNA isolation and miR quantification by quantitative polymerase chain reaction (RT‐qPCR) based on good laboratory practice (GLP). Validation was carried out exemplarily on four miRs, which had already been described as potential biomarkers in previous studies. As basis for RNA analysis using RT‐qPCR, the Minimum Information for Publication of Quantitative Real‐Time PCR Experiments were applied and adapted on the analysis of circulating miRs from human plasma. In our study, we identified and solved several pitfalls from handling to normalization strategy in the analysis of extracellular miRs that lead to inconsistent and non‐repeatable data. Principles of GLP set a framework of experimental design, performance and monitoring to ensure high quality and reliable data. Within this study, we appointed first acceptance criteria for circulating miR quantification during validation which set standards for future miR quantification in blood samples.
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spelling pubmed-69963202020-03-02 Validation of extracellular miRNA quantification in blood samples using RT‐qPCR Fauth, Maria Hegewald, Anett B. Schmitz, Lisa Krone, Dorothee J. Saul, Meike J. FASEB Bioadv Research Articles Extracellular microRNAs (miRs) have been proposed as important blood‐based biomarkers for several diseases. Contrary to proteins and other RNA classes, miRs are stable and easily detectable in body fluids. In this respect, miRs represent a perfect candidate for minimal invasive biomarkers which can hopefully become a complement for invasive histological examinations of tumor tissue. Despite the high number of miR biomarker studies, the specificity and reproducibility of these studies is missing. Therefore, the standardization of pre‐analytical and analytical methods is urgently needed. Here, we validated miR analysis for RNA isolation and miR quantification by quantitative polymerase chain reaction (RT‐qPCR) based on good laboratory practice (GLP). Validation was carried out exemplarily on four miRs, which had already been described as potential biomarkers in previous studies. As basis for RNA analysis using RT‐qPCR, the Minimum Information for Publication of Quantitative Real‐Time PCR Experiments were applied and adapted on the analysis of circulating miRs from human plasma. In our study, we identified and solved several pitfalls from handling to normalization strategy in the analysis of extracellular miRs that lead to inconsistent and non‐repeatable data. Principles of GLP set a framework of experimental design, performance and monitoring to ensure high quality and reliable data. Within this study, we appointed first acceptance criteria for circulating miR quantification during validation which set standards for future miR quantification in blood samples. John Wiley and Sons Inc. 2019-07-01 /pmc/articles/PMC6996320/ /pubmed/32123845 http://dx.doi.org/10.1096/fba.2019-00018 Text en © 2019 The Authors. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Articles
Fauth, Maria
Hegewald, Anett B.
Schmitz, Lisa
Krone, Dorothee J.
Saul, Meike J.
Validation of extracellular miRNA quantification in blood samples using RT‐qPCR
title Validation of extracellular miRNA quantification in blood samples using RT‐qPCR
title_full Validation of extracellular miRNA quantification in blood samples using RT‐qPCR
title_fullStr Validation of extracellular miRNA quantification in blood samples using RT‐qPCR
title_full_unstemmed Validation of extracellular miRNA quantification in blood samples using RT‐qPCR
title_short Validation of extracellular miRNA quantification in blood samples using RT‐qPCR
title_sort validation of extracellular mirna quantification in blood samples using rt‐qpcr
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6996320/
https://www.ncbi.nlm.nih.gov/pubmed/32123845
http://dx.doi.org/10.1096/fba.2019-00018
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