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Validation of extracellular miRNA quantification in blood samples using RT‐qPCR
Extracellular microRNAs (miRs) have been proposed as important blood‐based biomarkers for several diseases. Contrary to proteins and other RNA classes, miRs are stable and easily detectable in body fluids. In this respect, miRs represent a perfect candidate for minimal invasive biomarkers which can...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6996320/ https://www.ncbi.nlm.nih.gov/pubmed/32123845 http://dx.doi.org/10.1096/fba.2019-00018 |
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author | Fauth, Maria Hegewald, Anett B. Schmitz, Lisa Krone, Dorothee J. Saul, Meike J. |
author_facet | Fauth, Maria Hegewald, Anett B. Schmitz, Lisa Krone, Dorothee J. Saul, Meike J. |
author_sort | Fauth, Maria |
collection | PubMed |
description | Extracellular microRNAs (miRs) have been proposed as important blood‐based biomarkers for several diseases. Contrary to proteins and other RNA classes, miRs are stable and easily detectable in body fluids. In this respect, miRs represent a perfect candidate for minimal invasive biomarkers which can hopefully become a complement for invasive histological examinations of tumor tissue. Despite the high number of miR biomarker studies, the specificity and reproducibility of these studies is missing. Therefore, the standardization of pre‐analytical and analytical methods is urgently needed. Here, we validated miR analysis for RNA isolation and miR quantification by quantitative polymerase chain reaction (RT‐qPCR) based on good laboratory practice (GLP). Validation was carried out exemplarily on four miRs, which had already been described as potential biomarkers in previous studies. As basis for RNA analysis using RT‐qPCR, the Minimum Information for Publication of Quantitative Real‐Time PCR Experiments were applied and adapted on the analysis of circulating miRs from human plasma. In our study, we identified and solved several pitfalls from handling to normalization strategy in the analysis of extracellular miRs that lead to inconsistent and non‐repeatable data. Principles of GLP set a framework of experimental design, performance and monitoring to ensure high quality and reliable data. Within this study, we appointed first acceptance criteria for circulating miR quantification during validation which set standards for future miR quantification in blood samples. |
format | Online Article Text |
id | pubmed-6996320 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-69963202020-03-02 Validation of extracellular miRNA quantification in blood samples using RT‐qPCR Fauth, Maria Hegewald, Anett B. Schmitz, Lisa Krone, Dorothee J. Saul, Meike J. FASEB Bioadv Research Articles Extracellular microRNAs (miRs) have been proposed as important blood‐based biomarkers for several diseases. Contrary to proteins and other RNA classes, miRs are stable and easily detectable in body fluids. In this respect, miRs represent a perfect candidate for minimal invasive biomarkers which can hopefully become a complement for invasive histological examinations of tumor tissue. Despite the high number of miR biomarker studies, the specificity and reproducibility of these studies is missing. Therefore, the standardization of pre‐analytical and analytical methods is urgently needed. Here, we validated miR analysis for RNA isolation and miR quantification by quantitative polymerase chain reaction (RT‐qPCR) based on good laboratory practice (GLP). Validation was carried out exemplarily on four miRs, which had already been described as potential biomarkers in previous studies. As basis for RNA analysis using RT‐qPCR, the Minimum Information for Publication of Quantitative Real‐Time PCR Experiments were applied and adapted on the analysis of circulating miRs from human plasma. In our study, we identified and solved several pitfalls from handling to normalization strategy in the analysis of extracellular miRs that lead to inconsistent and non‐repeatable data. Principles of GLP set a framework of experimental design, performance and monitoring to ensure high quality and reliable data. Within this study, we appointed first acceptance criteria for circulating miR quantification during validation which set standards for future miR quantification in blood samples. John Wiley and Sons Inc. 2019-07-01 /pmc/articles/PMC6996320/ /pubmed/32123845 http://dx.doi.org/10.1096/fba.2019-00018 Text en © 2019 The Authors. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Articles Fauth, Maria Hegewald, Anett B. Schmitz, Lisa Krone, Dorothee J. Saul, Meike J. Validation of extracellular miRNA quantification in blood samples using RT‐qPCR |
title | Validation of extracellular miRNA quantification in blood samples using RT‐qPCR |
title_full | Validation of extracellular miRNA quantification in blood samples using RT‐qPCR |
title_fullStr | Validation of extracellular miRNA quantification in blood samples using RT‐qPCR |
title_full_unstemmed | Validation of extracellular miRNA quantification in blood samples using RT‐qPCR |
title_short | Validation of extracellular miRNA quantification in blood samples using RT‐qPCR |
title_sort | validation of extracellular mirna quantification in blood samples using rt‐qpcr |
topic | Research Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6996320/ https://www.ncbi.nlm.nih.gov/pubmed/32123845 http://dx.doi.org/10.1096/fba.2019-00018 |
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