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Selection of reference genes for tissue/organ samples of adults of Eucryptorrhynchus scrobiculatus

Eucryptorrhynchus scrobiculatus is an important wood-boring pest of Ailanthus altissima in China, where it causes a large number of these trees to weaken or even die. To identify genes related to economic traits or specific cellular processes in E. scrobiculatus, gene expression in multiple tissue/o...

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Detalles Bibliográficos
Autores principales: Gao, Peng, Wang, Jingzhen, Wen, Junbao
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6996836/
https://www.ncbi.nlm.nih.gov/pubmed/32012184
http://dx.doi.org/10.1371/journal.pone.0228308
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author Gao, Peng
Wang, Jingzhen
Wen, Junbao
author_facet Gao, Peng
Wang, Jingzhen
Wen, Junbao
author_sort Gao, Peng
collection PubMed
description Eucryptorrhynchus scrobiculatus is an important wood-boring pest of Ailanthus altissima in China, where it causes a large number of these trees to weaken or even die. To identify genes related to economic traits or specific cellular processes in E. scrobiculatus, gene expression in multiple tissue/organ samples is commonly surveyed, and reference genes are required in this process as a control for normalization. In the present study, 18 candidate reference genes from E. scrobiculatus were identified, and the expression levels of these reference genes were estimated through quantitative real-time PCR. Differences in expression levels were analyzed with four algorithms (geNorm, NormFinder, BestKeeper and delta Ct) and comprehensively with RefFinder. With the most stable levels of expression in different tissues, RPL13, RPS3 and RPL36 were determined to be suitable for use as candidate reference genes. Moreover, the expression profile of one target gene (glycoside hydrolase family 45, GH45) confirmed the reliability of the selected candidate reference genes. This study provides the first set of suitable candidate reference genes for gene expression studies in E. scrobiculatus, and the findings will facilitate subsequent transcriptomics and functional gene research on this pest.
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spelling pubmed-69968362020-02-20 Selection of reference genes for tissue/organ samples of adults of Eucryptorrhynchus scrobiculatus Gao, Peng Wang, Jingzhen Wen, Junbao PLoS One Research Article Eucryptorrhynchus scrobiculatus is an important wood-boring pest of Ailanthus altissima in China, where it causes a large number of these trees to weaken or even die. To identify genes related to economic traits or specific cellular processes in E. scrobiculatus, gene expression in multiple tissue/organ samples is commonly surveyed, and reference genes are required in this process as a control for normalization. In the present study, 18 candidate reference genes from E. scrobiculatus were identified, and the expression levels of these reference genes were estimated through quantitative real-time PCR. Differences in expression levels were analyzed with four algorithms (geNorm, NormFinder, BestKeeper and delta Ct) and comprehensively with RefFinder. With the most stable levels of expression in different tissues, RPL13, RPS3 and RPL36 were determined to be suitable for use as candidate reference genes. Moreover, the expression profile of one target gene (glycoside hydrolase family 45, GH45) confirmed the reliability of the selected candidate reference genes. This study provides the first set of suitable candidate reference genes for gene expression studies in E. scrobiculatus, and the findings will facilitate subsequent transcriptomics and functional gene research on this pest. Public Library of Science 2020-02-03 /pmc/articles/PMC6996836/ /pubmed/32012184 http://dx.doi.org/10.1371/journal.pone.0228308 Text en © 2020 Gao et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Gao, Peng
Wang, Jingzhen
Wen, Junbao
Selection of reference genes for tissue/organ samples of adults of Eucryptorrhynchus scrobiculatus
title Selection of reference genes for tissue/organ samples of adults of Eucryptorrhynchus scrobiculatus
title_full Selection of reference genes for tissue/organ samples of adults of Eucryptorrhynchus scrobiculatus
title_fullStr Selection of reference genes for tissue/organ samples of adults of Eucryptorrhynchus scrobiculatus
title_full_unstemmed Selection of reference genes for tissue/organ samples of adults of Eucryptorrhynchus scrobiculatus
title_short Selection of reference genes for tissue/organ samples of adults of Eucryptorrhynchus scrobiculatus
title_sort selection of reference genes for tissue/organ samples of adults of eucryptorrhynchus scrobiculatus
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6996836/
https://www.ncbi.nlm.nih.gov/pubmed/32012184
http://dx.doi.org/10.1371/journal.pone.0228308
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