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Selection of reference genes for tissue/organ samples of adults of Eucryptorrhynchus scrobiculatus
Eucryptorrhynchus scrobiculatus is an important wood-boring pest of Ailanthus altissima in China, where it causes a large number of these trees to weaken or even die. To identify genes related to economic traits or specific cellular processes in E. scrobiculatus, gene expression in multiple tissue/o...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6996836/ https://www.ncbi.nlm.nih.gov/pubmed/32012184 http://dx.doi.org/10.1371/journal.pone.0228308 |
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author | Gao, Peng Wang, Jingzhen Wen, Junbao |
author_facet | Gao, Peng Wang, Jingzhen Wen, Junbao |
author_sort | Gao, Peng |
collection | PubMed |
description | Eucryptorrhynchus scrobiculatus is an important wood-boring pest of Ailanthus altissima in China, where it causes a large number of these trees to weaken or even die. To identify genes related to economic traits or specific cellular processes in E. scrobiculatus, gene expression in multiple tissue/organ samples is commonly surveyed, and reference genes are required in this process as a control for normalization. In the present study, 18 candidate reference genes from E. scrobiculatus were identified, and the expression levels of these reference genes were estimated through quantitative real-time PCR. Differences in expression levels were analyzed with four algorithms (geNorm, NormFinder, BestKeeper and delta Ct) and comprehensively with RefFinder. With the most stable levels of expression in different tissues, RPL13, RPS3 and RPL36 were determined to be suitable for use as candidate reference genes. Moreover, the expression profile of one target gene (glycoside hydrolase family 45, GH45) confirmed the reliability of the selected candidate reference genes. This study provides the first set of suitable candidate reference genes for gene expression studies in E. scrobiculatus, and the findings will facilitate subsequent transcriptomics and functional gene research on this pest. |
format | Online Article Text |
id | pubmed-6996836 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-69968362020-02-20 Selection of reference genes for tissue/organ samples of adults of Eucryptorrhynchus scrobiculatus Gao, Peng Wang, Jingzhen Wen, Junbao PLoS One Research Article Eucryptorrhynchus scrobiculatus is an important wood-boring pest of Ailanthus altissima in China, where it causes a large number of these trees to weaken or even die. To identify genes related to economic traits or specific cellular processes in E. scrobiculatus, gene expression in multiple tissue/organ samples is commonly surveyed, and reference genes are required in this process as a control for normalization. In the present study, 18 candidate reference genes from E. scrobiculatus were identified, and the expression levels of these reference genes were estimated through quantitative real-time PCR. Differences in expression levels were analyzed with four algorithms (geNorm, NormFinder, BestKeeper and delta Ct) and comprehensively with RefFinder. With the most stable levels of expression in different tissues, RPL13, RPS3 and RPL36 were determined to be suitable for use as candidate reference genes. Moreover, the expression profile of one target gene (glycoside hydrolase family 45, GH45) confirmed the reliability of the selected candidate reference genes. This study provides the first set of suitable candidate reference genes for gene expression studies in E. scrobiculatus, and the findings will facilitate subsequent transcriptomics and functional gene research on this pest. Public Library of Science 2020-02-03 /pmc/articles/PMC6996836/ /pubmed/32012184 http://dx.doi.org/10.1371/journal.pone.0228308 Text en © 2020 Gao et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Gao, Peng Wang, Jingzhen Wen, Junbao Selection of reference genes for tissue/organ samples of adults of Eucryptorrhynchus scrobiculatus |
title | Selection of reference genes for tissue/organ samples of adults of Eucryptorrhynchus scrobiculatus |
title_full | Selection of reference genes for tissue/organ samples of adults of Eucryptorrhynchus scrobiculatus |
title_fullStr | Selection of reference genes for tissue/organ samples of adults of Eucryptorrhynchus scrobiculatus |
title_full_unstemmed | Selection of reference genes for tissue/organ samples of adults of Eucryptorrhynchus scrobiculatus |
title_short | Selection of reference genes for tissue/organ samples of adults of Eucryptorrhynchus scrobiculatus |
title_sort | selection of reference genes for tissue/organ samples of adults of eucryptorrhynchus scrobiculatus |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6996836/ https://www.ncbi.nlm.nih.gov/pubmed/32012184 http://dx.doi.org/10.1371/journal.pone.0228308 |
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