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Systematically Dissecting the Function of RNA-Binding Proteins During Glioma Progression
RNA-binding proteins (RBPs) play important roles in regulating gene expression and dysregulation of RBPs have been observed in various types of cancer. However, the role of RBPs during glioma progression, and particular in Chinese patients, is only starting to be unveiled. Here, we systematically an...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2020
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6997557/ https://www.ncbi.nlm.nih.gov/pubmed/32047515 http://dx.doi.org/10.3389/fgene.2019.01394 |
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author | Wang, Jianjun Qi, Jianfeng Hou, Xianzeng |
author_facet | Wang, Jianjun Qi, Jianfeng Hou, Xianzeng |
author_sort | Wang, Jianjun |
collection | PubMed |
description | RNA-binding proteins (RBPs) play important roles in regulating gene expression and dysregulation of RBPs have been observed in various types of cancer. However, the role of RBPs during glioma progression, and particular in Chinese patients, is only starting to be unveiled. Here, we systematically analyzed the somatic mutation, gene expression patterns of 2949 RBPs during glioma progression. Our comprehensive study reveals several of highly mutated genes (such as ATRX, TTN and SETD2) and differentially expressed genes (such as KIF4A, TTK and CEP55). Integration of the expression of RBPs and genes, we constructed a regulatory network in glioma and revealed the functional links between RBPs and cancer-related genes. Moreover, we identified the prognosis spectrum of RBPs during glioma progression. The expression of a number of RBPs, such as SNRPN and IGF2BP3, are significantly associated with overall survival of patients in all grades. Taken together, our analyses provided a valuable RBP resource during glioma progression, and revealed several candidates that potentially contribute to development of therapeutic targets for glioma. |
format | Online Article Text |
id | pubmed-6997557 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-69975572020-02-11 Systematically Dissecting the Function of RNA-Binding Proteins During Glioma Progression Wang, Jianjun Qi, Jianfeng Hou, Xianzeng Front Genet Genetics RNA-binding proteins (RBPs) play important roles in regulating gene expression and dysregulation of RBPs have been observed in various types of cancer. However, the role of RBPs during glioma progression, and particular in Chinese patients, is only starting to be unveiled. Here, we systematically analyzed the somatic mutation, gene expression patterns of 2949 RBPs during glioma progression. Our comprehensive study reveals several of highly mutated genes (such as ATRX, TTN and SETD2) and differentially expressed genes (such as KIF4A, TTK and CEP55). Integration of the expression of RBPs and genes, we constructed a regulatory network in glioma and revealed the functional links between RBPs and cancer-related genes. Moreover, we identified the prognosis spectrum of RBPs during glioma progression. The expression of a number of RBPs, such as SNRPN and IGF2BP3, are significantly associated with overall survival of patients in all grades. Taken together, our analyses provided a valuable RBP resource during glioma progression, and revealed several candidates that potentially contribute to development of therapeutic targets for glioma. Frontiers Media S.A. 2020-01-28 /pmc/articles/PMC6997557/ /pubmed/32047515 http://dx.doi.org/10.3389/fgene.2019.01394 Text en Copyright © 2020 Wang, Qi and Hou http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Genetics Wang, Jianjun Qi, Jianfeng Hou, Xianzeng Systematically Dissecting the Function of RNA-Binding Proteins During Glioma Progression |
title | Systematically Dissecting the Function of RNA-Binding Proteins During Glioma Progression |
title_full | Systematically Dissecting the Function of RNA-Binding Proteins During Glioma Progression |
title_fullStr | Systematically Dissecting the Function of RNA-Binding Proteins During Glioma Progression |
title_full_unstemmed | Systematically Dissecting the Function of RNA-Binding Proteins During Glioma Progression |
title_short | Systematically Dissecting the Function of RNA-Binding Proteins During Glioma Progression |
title_sort | systematically dissecting the function of rna-binding proteins during glioma progression |
topic | Genetics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6997557/ https://www.ncbi.nlm.nih.gov/pubmed/32047515 http://dx.doi.org/10.3389/fgene.2019.01394 |
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