Cargando…
Multi-Omic Analyses of Growth Cones at Different Developmental Stages Provides Insight into Pathways in Adult Neuroregeneration
Growth cones (GCs) are structures associated with growing neurons. GC membrane expansion, which necessitates protein-lipid interactions, is critical to axonal elongation in development and in adult neuritogenesis. We present a multi-omic analysis that integrates proteomics and lipidomics data for th...
Autores principales: | , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2020
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6997871/ https://www.ncbi.nlm.nih.gov/pubmed/32058951 http://dx.doi.org/10.1016/j.isci.2020.100836 |
_version_ | 1783493768933015552 |
---|---|
author | Chauhan, Muhammad Zain Arcuri, Jennifer Park, Kevin K. Zafar, Maroof Khan Fatmi, Rabeet Hackam, Abigail S. Yin, Yuqin Benowitz, Larry Goldberg, Jeffrey L. Samarah, Mohammad Bhattacharya, Sanjoy K. |
author_facet | Chauhan, Muhammad Zain Arcuri, Jennifer Park, Kevin K. Zafar, Maroof Khan Fatmi, Rabeet Hackam, Abigail S. Yin, Yuqin Benowitz, Larry Goldberg, Jeffrey L. Samarah, Mohammad Bhattacharya, Sanjoy K. |
author_sort | Chauhan, Muhammad Zain |
collection | PubMed |
description | Growth cones (GCs) are structures associated with growing neurons. GC membrane expansion, which necessitates protein-lipid interactions, is critical to axonal elongation in development and in adult neuritogenesis. We present a multi-omic analysis that integrates proteomics and lipidomics data for the identification of GC pathways, cell phenotypes, and lipid-protein interactions, with an analytic platform to facilitate the visualization of these data. We combine lipidomic data from GC and adult axonal regeneration following optic nerve crush. Our results reveal significant molecular variability in GCs across developmental ages that aligns with the upregulation and downregulation of lipid metabolic processes and correlates with distinct changes in the lipid composition of GC plasmalemma. We find that these processes also define the transition into a growth-permissive state in the adult central nervous system. The insight derived from these analyses will aid in promoting adult regeneration and functional innervation in devastating neurodegenerative diseases. |
format | Online Article Text |
id | pubmed-6997871 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-69978712020-02-10 Multi-Omic Analyses of Growth Cones at Different Developmental Stages Provides Insight into Pathways in Adult Neuroregeneration Chauhan, Muhammad Zain Arcuri, Jennifer Park, Kevin K. Zafar, Maroof Khan Fatmi, Rabeet Hackam, Abigail S. Yin, Yuqin Benowitz, Larry Goldberg, Jeffrey L. Samarah, Mohammad Bhattacharya, Sanjoy K. iScience Article Growth cones (GCs) are structures associated with growing neurons. GC membrane expansion, which necessitates protein-lipid interactions, is critical to axonal elongation in development and in adult neuritogenesis. We present a multi-omic analysis that integrates proteomics and lipidomics data for the identification of GC pathways, cell phenotypes, and lipid-protein interactions, with an analytic platform to facilitate the visualization of these data. We combine lipidomic data from GC and adult axonal regeneration following optic nerve crush. Our results reveal significant molecular variability in GCs across developmental ages that aligns with the upregulation and downregulation of lipid metabolic processes and correlates with distinct changes in the lipid composition of GC plasmalemma. We find that these processes also define the transition into a growth-permissive state in the adult central nervous system. The insight derived from these analyses will aid in promoting adult regeneration and functional innervation in devastating neurodegenerative diseases. Elsevier 2020-01-14 /pmc/articles/PMC6997871/ /pubmed/32058951 http://dx.doi.org/10.1016/j.isci.2020.100836 Text en © 2020 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Chauhan, Muhammad Zain Arcuri, Jennifer Park, Kevin K. Zafar, Maroof Khan Fatmi, Rabeet Hackam, Abigail S. Yin, Yuqin Benowitz, Larry Goldberg, Jeffrey L. Samarah, Mohammad Bhattacharya, Sanjoy K. Multi-Omic Analyses of Growth Cones at Different Developmental Stages Provides Insight into Pathways in Adult Neuroregeneration |
title | Multi-Omic Analyses of Growth Cones at Different Developmental Stages Provides Insight into Pathways in Adult Neuroregeneration |
title_full | Multi-Omic Analyses of Growth Cones at Different Developmental Stages Provides Insight into Pathways in Adult Neuroregeneration |
title_fullStr | Multi-Omic Analyses of Growth Cones at Different Developmental Stages Provides Insight into Pathways in Adult Neuroregeneration |
title_full_unstemmed | Multi-Omic Analyses of Growth Cones at Different Developmental Stages Provides Insight into Pathways in Adult Neuroregeneration |
title_short | Multi-Omic Analyses of Growth Cones at Different Developmental Stages Provides Insight into Pathways in Adult Neuroregeneration |
title_sort | multi-omic analyses of growth cones at different developmental stages provides insight into pathways in adult neuroregeneration |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6997871/ https://www.ncbi.nlm.nih.gov/pubmed/32058951 http://dx.doi.org/10.1016/j.isci.2020.100836 |
work_keys_str_mv | AT chauhanmuhammadzain multiomicanalysesofgrowthconesatdifferentdevelopmentalstagesprovidesinsightintopathwaysinadultneuroregeneration AT arcurijennifer multiomicanalysesofgrowthconesatdifferentdevelopmentalstagesprovidesinsightintopathwaysinadultneuroregeneration AT parkkevink multiomicanalysesofgrowthconesatdifferentdevelopmentalstagesprovidesinsightintopathwaysinadultneuroregeneration AT zafarmaroofkhan multiomicanalysesofgrowthconesatdifferentdevelopmentalstagesprovidesinsightintopathwaysinadultneuroregeneration AT fatmirabeet multiomicanalysesofgrowthconesatdifferentdevelopmentalstagesprovidesinsightintopathwaysinadultneuroregeneration AT hackamabigails multiomicanalysesofgrowthconesatdifferentdevelopmentalstagesprovidesinsightintopathwaysinadultneuroregeneration AT yinyuqin multiomicanalysesofgrowthconesatdifferentdevelopmentalstagesprovidesinsightintopathwaysinadultneuroregeneration AT benowitzlarry multiomicanalysesofgrowthconesatdifferentdevelopmentalstagesprovidesinsightintopathwaysinadultneuroregeneration AT goldbergjeffreyl multiomicanalysesofgrowthconesatdifferentdevelopmentalstagesprovidesinsightintopathwaysinadultneuroregeneration AT samarahmohammad multiomicanalysesofgrowthconesatdifferentdevelopmentalstagesprovidesinsightintopathwaysinadultneuroregeneration AT bhattacharyasanjoyk multiomicanalysesofgrowthconesatdifferentdevelopmentalstagesprovidesinsightintopathwaysinadultneuroregeneration |