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Multi-Omic Analyses of Growth Cones at Different Developmental Stages Provides Insight into Pathways in Adult Neuroregeneration

Growth cones (GCs) are structures associated with growing neurons. GC membrane expansion, which necessitates protein-lipid interactions, is critical to axonal elongation in development and in adult neuritogenesis. We present a multi-omic analysis that integrates proteomics and lipidomics data for th...

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Autores principales: Chauhan, Muhammad Zain, Arcuri, Jennifer, Park, Kevin K., Zafar, Maroof Khan, Fatmi, Rabeet, Hackam, Abigail S., Yin, Yuqin, Benowitz, Larry, Goldberg, Jeffrey L., Samarah, Mohammad, Bhattacharya, Sanjoy K.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6997871/
https://www.ncbi.nlm.nih.gov/pubmed/32058951
http://dx.doi.org/10.1016/j.isci.2020.100836
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author Chauhan, Muhammad Zain
Arcuri, Jennifer
Park, Kevin K.
Zafar, Maroof Khan
Fatmi, Rabeet
Hackam, Abigail S.
Yin, Yuqin
Benowitz, Larry
Goldberg, Jeffrey L.
Samarah, Mohammad
Bhattacharya, Sanjoy K.
author_facet Chauhan, Muhammad Zain
Arcuri, Jennifer
Park, Kevin K.
Zafar, Maroof Khan
Fatmi, Rabeet
Hackam, Abigail S.
Yin, Yuqin
Benowitz, Larry
Goldberg, Jeffrey L.
Samarah, Mohammad
Bhattacharya, Sanjoy K.
author_sort Chauhan, Muhammad Zain
collection PubMed
description Growth cones (GCs) are structures associated with growing neurons. GC membrane expansion, which necessitates protein-lipid interactions, is critical to axonal elongation in development and in adult neuritogenesis. We present a multi-omic analysis that integrates proteomics and lipidomics data for the identification of GC pathways, cell phenotypes, and lipid-protein interactions, with an analytic platform to facilitate the visualization of these data. We combine lipidomic data from GC and adult axonal regeneration following optic nerve crush. Our results reveal significant molecular variability in GCs across developmental ages that aligns with the upregulation and downregulation of lipid metabolic processes and correlates with distinct changes in the lipid composition of GC plasmalemma. We find that these processes also define the transition into a growth-permissive state in the adult central nervous system. The insight derived from these analyses will aid in promoting adult regeneration and functional innervation in devastating neurodegenerative diseases.
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spelling pubmed-69978712020-02-10 Multi-Omic Analyses of Growth Cones at Different Developmental Stages Provides Insight into Pathways in Adult Neuroregeneration Chauhan, Muhammad Zain Arcuri, Jennifer Park, Kevin K. Zafar, Maroof Khan Fatmi, Rabeet Hackam, Abigail S. Yin, Yuqin Benowitz, Larry Goldberg, Jeffrey L. Samarah, Mohammad Bhattacharya, Sanjoy K. iScience Article Growth cones (GCs) are structures associated with growing neurons. GC membrane expansion, which necessitates protein-lipid interactions, is critical to axonal elongation in development and in adult neuritogenesis. We present a multi-omic analysis that integrates proteomics and lipidomics data for the identification of GC pathways, cell phenotypes, and lipid-protein interactions, with an analytic platform to facilitate the visualization of these data. We combine lipidomic data from GC and adult axonal regeneration following optic nerve crush. Our results reveal significant molecular variability in GCs across developmental ages that aligns with the upregulation and downregulation of lipid metabolic processes and correlates with distinct changes in the lipid composition of GC plasmalemma. We find that these processes also define the transition into a growth-permissive state in the adult central nervous system. The insight derived from these analyses will aid in promoting adult regeneration and functional innervation in devastating neurodegenerative diseases. Elsevier 2020-01-14 /pmc/articles/PMC6997871/ /pubmed/32058951 http://dx.doi.org/10.1016/j.isci.2020.100836 Text en © 2020 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Chauhan, Muhammad Zain
Arcuri, Jennifer
Park, Kevin K.
Zafar, Maroof Khan
Fatmi, Rabeet
Hackam, Abigail S.
Yin, Yuqin
Benowitz, Larry
Goldberg, Jeffrey L.
Samarah, Mohammad
Bhattacharya, Sanjoy K.
Multi-Omic Analyses of Growth Cones at Different Developmental Stages Provides Insight into Pathways in Adult Neuroregeneration
title Multi-Omic Analyses of Growth Cones at Different Developmental Stages Provides Insight into Pathways in Adult Neuroregeneration
title_full Multi-Omic Analyses of Growth Cones at Different Developmental Stages Provides Insight into Pathways in Adult Neuroregeneration
title_fullStr Multi-Omic Analyses of Growth Cones at Different Developmental Stages Provides Insight into Pathways in Adult Neuroregeneration
title_full_unstemmed Multi-Omic Analyses of Growth Cones at Different Developmental Stages Provides Insight into Pathways in Adult Neuroregeneration
title_short Multi-Omic Analyses of Growth Cones at Different Developmental Stages Provides Insight into Pathways in Adult Neuroregeneration
title_sort multi-omic analyses of growth cones at different developmental stages provides insight into pathways in adult neuroregeneration
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6997871/
https://www.ncbi.nlm.nih.gov/pubmed/32058951
http://dx.doi.org/10.1016/j.isci.2020.100836
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