Cargando…

Bioinformatics analysis of whole slide images reveals significant neighborhood preferences of tumor cells in Hodgkin lymphoma

In pathology, tissue images are evaluated using a light microscope, relying on the expertise and experience of pathologists. There is a great need for computational methods to quantify and standardize histological observations. Computational quantification methods become more and more essential to e...

Descripción completa

Detalles Bibliográficos
Autores principales: Hannig, Jennifer, Schäfer, Hendrik, Ackermann, Jörg, Hebel, Marie, Schäfer, Tim, Döring, Claudia, Hartmann, Sylvia, Hansmann, Martin-Leo, Koch, Ina
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6999891/
https://www.ncbi.nlm.nih.gov/pubmed/31961873
http://dx.doi.org/10.1371/journal.pcbi.1007516
_version_ 1783493977886949376
author Hannig, Jennifer
Schäfer, Hendrik
Ackermann, Jörg
Hebel, Marie
Schäfer, Tim
Döring, Claudia
Hartmann, Sylvia
Hansmann, Martin-Leo
Koch, Ina
author_facet Hannig, Jennifer
Schäfer, Hendrik
Ackermann, Jörg
Hebel, Marie
Schäfer, Tim
Döring, Claudia
Hartmann, Sylvia
Hansmann, Martin-Leo
Koch, Ina
author_sort Hannig, Jennifer
collection PubMed
description In pathology, tissue images are evaluated using a light microscope, relying on the expertise and experience of pathologists. There is a great need for computational methods to quantify and standardize histological observations. Computational quantification methods become more and more essential to evaluate tissue images. In particular, the distribution of tumor cells and their microenvironment are of special interest. Here, we systematically investigated tumor cell properties and their spatial neighborhood relations by a new application of statistical analysis to whole slide images of Hodgkin lymphoma, a tumor arising in lymph nodes, and inflammation of lymph nodes called lymphadenitis. We considered properties of more than 400, 000 immunohistochemically stained, CD30-positive cells in 35 whole slide images of tissue sections from subtypes of the classical Hodgkin lymphoma, nodular sclerosis and mixed cellularity, as well as from lymphadenitis. We found that cells of specific morphology exhibited significantly favored and unfavored spatial neighborhood relations of cells in dependence of their morphology. This information is important to evaluate differences between Hodgkin lymph nodes infiltrated by tumor cells (Hodgkin lymphoma) and inflamed lymph nodes, concerning the neighborhood relations of cells and the sizes of cells. The quantification of neighborhood relations revealed new insights of relations of CD30-positive cells in different diagnosis cases. The approach is general and can easily be applied to whole slide image analysis of other tumor types.
format Online
Article
Text
id pubmed-6999891
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher Public Library of Science
record_format MEDLINE/PubMed
spelling pubmed-69998912020-02-18 Bioinformatics analysis of whole slide images reveals significant neighborhood preferences of tumor cells in Hodgkin lymphoma Hannig, Jennifer Schäfer, Hendrik Ackermann, Jörg Hebel, Marie Schäfer, Tim Döring, Claudia Hartmann, Sylvia Hansmann, Martin-Leo Koch, Ina PLoS Comput Biol Research Article In pathology, tissue images are evaluated using a light microscope, relying on the expertise and experience of pathologists. There is a great need for computational methods to quantify and standardize histological observations. Computational quantification methods become more and more essential to evaluate tissue images. In particular, the distribution of tumor cells and their microenvironment are of special interest. Here, we systematically investigated tumor cell properties and their spatial neighborhood relations by a new application of statistical analysis to whole slide images of Hodgkin lymphoma, a tumor arising in lymph nodes, and inflammation of lymph nodes called lymphadenitis. We considered properties of more than 400, 000 immunohistochemically stained, CD30-positive cells in 35 whole slide images of tissue sections from subtypes of the classical Hodgkin lymphoma, nodular sclerosis and mixed cellularity, as well as from lymphadenitis. We found that cells of specific morphology exhibited significantly favored and unfavored spatial neighborhood relations of cells in dependence of their morphology. This information is important to evaluate differences between Hodgkin lymph nodes infiltrated by tumor cells (Hodgkin lymphoma) and inflamed lymph nodes, concerning the neighborhood relations of cells and the sizes of cells. The quantification of neighborhood relations revealed new insights of relations of CD30-positive cells in different diagnosis cases. The approach is general and can easily be applied to whole slide image analysis of other tumor types. Public Library of Science 2020-01-21 /pmc/articles/PMC6999891/ /pubmed/31961873 http://dx.doi.org/10.1371/journal.pcbi.1007516 Text en © 2020 Hannig et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Hannig, Jennifer
Schäfer, Hendrik
Ackermann, Jörg
Hebel, Marie
Schäfer, Tim
Döring, Claudia
Hartmann, Sylvia
Hansmann, Martin-Leo
Koch, Ina
Bioinformatics analysis of whole slide images reveals significant neighborhood preferences of tumor cells in Hodgkin lymphoma
title Bioinformatics analysis of whole slide images reveals significant neighborhood preferences of tumor cells in Hodgkin lymphoma
title_full Bioinformatics analysis of whole slide images reveals significant neighborhood preferences of tumor cells in Hodgkin lymphoma
title_fullStr Bioinformatics analysis of whole slide images reveals significant neighborhood preferences of tumor cells in Hodgkin lymphoma
title_full_unstemmed Bioinformatics analysis of whole slide images reveals significant neighborhood preferences of tumor cells in Hodgkin lymphoma
title_short Bioinformatics analysis of whole slide images reveals significant neighborhood preferences of tumor cells in Hodgkin lymphoma
title_sort bioinformatics analysis of whole slide images reveals significant neighborhood preferences of tumor cells in hodgkin lymphoma
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6999891/
https://www.ncbi.nlm.nih.gov/pubmed/31961873
http://dx.doi.org/10.1371/journal.pcbi.1007516
work_keys_str_mv AT hannigjennifer bioinformaticsanalysisofwholeslideimagesrevealssignificantneighborhoodpreferencesoftumorcellsinhodgkinlymphoma
AT schaferhendrik bioinformaticsanalysisofwholeslideimagesrevealssignificantneighborhoodpreferencesoftumorcellsinhodgkinlymphoma
AT ackermannjorg bioinformaticsanalysisofwholeslideimagesrevealssignificantneighborhoodpreferencesoftumorcellsinhodgkinlymphoma
AT hebelmarie bioinformaticsanalysisofwholeslideimagesrevealssignificantneighborhoodpreferencesoftumorcellsinhodgkinlymphoma
AT schafertim bioinformaticsanalysisofwholeslideimagesrevealssignificantneighborhoodpreferencesoftumorcellsinhodgkinlymphoma
AT doringclaudia bioinformaticsanalysisofwholeslideimagesrevealssignificantneighborhoodpreferencesoftumorcellsinhodgkinlymphoma
AT hartmannsylvia bioinformaticsanalysisofwholeslideimagesrevealssignificantneighborhoodpreferencesoftumorcellsinhodgkinlymphoma
AT hansmannmartinleo bioinformaticsanalysisofwholeslideimagesrevealssignificantneighborhoodpreferencesoftumorcellsinhodgkinlymphoma
AT kochina bioinformaticsanalysisofwholeslideimagesrevealssignificantneighborhoodpreferencesoftumorcellsinhodgkinlymphoma