Cargando…

Nanopore sequencing-based genome assembly and evolutionary genomics of circum-basmati rice

BACKGROUND: The circum-basmati group of cultivated Asian rice (Oryza sativa) contains many iconic varieties and is widespread in the Indian subcontinent. Despite its economic and cultural importance, a high-quality reference genome is currently lacking, and the group’s evolutionary history is not fu...

Descripción completa

Detalles Bibliográficos
Autores principales:	Choi, Jae Young, Lye, Zoe N., Groen, Simon C., Dai, Xiaoguang, Rughani, Priyesh, Zaaijer, Sophie, Harrington, Eoghan D., Juul, Sissel, Purugganan, Michael D.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2020
Materias:	Research
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7001208/ https://www.ncbi.nlm.nih.gov/pubmed/32019604 http://dx.doi.org/10.1186/s13059-020-1938-2

Ejemplares similares

Ancestral polymorphisms shape the adaptive radiation of Metrosideros across the Hawaiian Islands
por: Choi, Jae Young, et al.
Publicado: (2021)

Discovery and mapping of genomic regions governing economically important traits of Basmati rice
por: Vemireddy, Lakshminarayana R, et al.
Publicado: (2015)

Evaluation of Whole-Genome Sequence, Genetic Diversity, and Agronomic Traits of Basmati Rice (Oryza sativa L.)
por: Kishor, D.S., et al.
Publicado: (2020)

Molecular breeding for the development of multiple disease resistance in Basmati rice
por: Singh, Atul, et al.
Publicado: (2012)

Molecular mapping of QTLs for grain dimension traits in Basmati rice
por: Malik, Ankit, et al.
Publicado: (2022)

Effect of storage on the nutritional and antioxidant properties of brown Basmati rice
por: Naveed, Aqsa, et al.
Publicado: (2022)

Deleterious Mutations and the Rare Allele Burden on Rice Gene Expression
por: Lye, Zoe, et al.
Publicado: (2022)

Marker Assisted Development and Characterization of Herbicide Tolerant Near Isogenic Lines of a Mega Basmati Rice Variety, “Pusa Basmati 1121”
por: Grover, Nitasha, et al.
Publicado: (2020)

Aroma volatile analyses and 2AP characterization at various developmental stages in Basmati and Non-Basmati scented rice (Oryza sativa L.) cultivars
por: Hinge, Vidya R., et al.
Publicado: (2016)

Marker aided introgression of ‘Saltol’, a major QTL for seedling stage salinity tolerance into an elite Basmati rice variety ‘Pusa Basmati 1509’
por: Yadav, Ashutosh Kumar, et al.
Publicado: (2020)

Biocontrol of Rhizoctonia solani in basmati rice by the application of Lactobacillus and Weissella spp.
por: Akhtar, Maira, et al.
Publicado: (2023)

Feasibility study on the use of elemental profiles to authenticate aromatic rice: the case of Basmati and Thai rice
por: Dumitrascu, Catalina, et al.
Publicado: (2021)

Evolutionary Epigenomics of Retrotransposon-Mediated Methylation Spreading in Rice
por: Choi, Jae Young, et al.
Publicado: (2018)

Genome-wide association study reveals novel genomic regions governing agronomic and grain quality traits and superior allelic combinations for Basmati rice improvement
por: Abhijith, Krishnan P., et al.
Publicado: (2022)

Handheld SERS coupled with QuEChERs for the sensitive analysis of multiple pesticides in basmati rice
por: Logan, Natasha, et al.
Publicado: (2022)

Pica for Uncooked Basmati Rice in Two Women with Iron Deficiency and a Review of Ryzophagia
por: Barton, James C., et al.
Publicado: (2016)

Off Earth Identification of Bacterial Populations Using 16S rDNA Nanopore Sequencing
por: Burton, Aaron S., et al.
Publicado: (2020)

Precise CRISPR-Cas9 Mediated Genome Editing in Super Basmati Rice for Resistance Against Bacterial Blight by Targeting the Major Susceptibility Gene
por: Zafar, Kashaf, et al.
Publicado: (2020)

Pyramiding of Four Broad Spectrum Bacterial Blight Resistance Genes in Cross Breeds of Basmati Rice
por: Ullah, Irfan, et al.
Publicado: (2022)

Physiology and growth of newly bred Basmati rice lines in response to vegetative-stage drought stress
por: Waheed, Raheela, et al.
Publicado: (2023)

Genetic Enhancement for Biotic Stress Resistance in Basmati Rice through Marker-Assisted Backcross Breeding
por: Singh, Gagandeep, et al.
Publicado: (2023)

Assembly-free single-molecule sequencing recovers complete virus genomes from natural microbial communities
por: Beaulaurier, John, et al.
Publicado: (2020)

Pusa Basmati 1121 – a rice variety with exceptional kernel elongation and volume expansion after cooking
por: Singh, Vijaipal, et al.
Publicado: (2018)

Perfluoroalkyl substances in circum-ArcticRangifer: caribou and reindeer
por: Roos, Anna Maria, et al.
Publicado: (2021)

Root Associated Bacillus sp. Improves Growth, Yield and Zinc Translocation for Basmati Rice (Oryza sativa) Varieties
por: Shakeel, Muhammad, et al.
Publicado: (2015)

Sole and combined effect of foliar zinc and arbuscular mycorrhizae inoculation on basmati rice growth, productivity and grains nutrient
por: Mehmood, Hassan, et al.
Publicado: (2022)

Employing template-directed CRISPR-based editing of the OsALS gene to create herbicide tolerance in Basmati rice
por: Zafar, Kashaf, et al.
Publicado: (2023)

Book Review: Health and Medicine in the Circum-Caribbean, 1800–1968
por: Abel, Christopher
Publicado: (2012)

Circum-Saharan Prehistory through the Lens of mtDNA Diversity
por: Diallo, Mame Yoro, et al.
Publicado: (2022)

Delayed postglacial colonization of Betula in Iceland and the circum North Atlantic
por: Harning, David J, et al.
Publicado: (2023)

Genome assembly and characterization of a complex zfBED-NLR gene-containing disease resistance locus in Carolina Gold Select rice with Nanopore sequencing
por: Read, Andrew C., et al.
Publicado: (2020)

Indian major basmati paddy seed varieties images dataset
por: Sharma, Arun, et al.
Publicado: (2020)

Marker-Assisted Introgression of Saltol QTL Enhances Seedling Stage Salt Tolerance in the Rice Variety “Pusa Basmati 1”
por: Singh, Vivek Kumar, et al.
Publicado: (2018)

Development and Molecular Characterization of Low Phytate Basmati Rice Through Induced Mutagenesis, Hybridization, Backcross, and Marker Assisted Breeding
por: Qamar, Zia-ul-, et al.
Publicado: (2019)

Retraction: Sole and combined effect of foliar zinc and arbuscular mycorrhizae inoculation on basmati rice growth, productivity and grains nutrient
Publicado: (2022)

Rapid evolutionary changes in gene expression in response to climate fluctuations
por: Hamann, Elena, et al.
Publicado: (2020)

Circum-Pan-Pacific Workshop on High-energy Spin Physics '96
por: Aoki, S, et al.
Publicado: (1997)

Circum-Pan-Pacific RIKEN Symposium on High Energy Spin Physics
por: Kumano, S, et al.
Publicado: (2000)

Biometry and phenology of two sibling Phylloscopus warblers on their circum-Mediterranean migrations
por: Zduniak, Piotr, et al.
Publicado: (2015)

Circum‐Setouchi conference: Transboundary support for residents in small‐scale programs
por: Mizumoto, Junki
Publicado: (2020)

Cannot write session to /tmp/vufind_sessions/sess_d1lnttv60sfi4u7bmlqfv4f1v8