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Predicting epileptic seizures using nonnegative matrix factorization

This paper presents a procedure for the patient-specific prediction of epileptic seizures. To this end, a combination of nonnegative matrix factorization (NMF) and smooth basis functions with robust regression is applied to power spectra of intracranial electroencephalographic (iEEG) signals. The re...

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Detalles Bibliográficos
Autores principales: Stojanović, Olivera, Kuhlmann, Levin, Pipa, Gordon
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7001919/
https://www.ncbi.nlm.nih.gov/pubmed/32023272
http://dx.doi.org/10.1371/journal.pone.0228025
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author Stojanović, Olivera
Kuhlmann, Levin
Pipa, Gordon
author_facet Stojanović, Olivera
Kuhlmann, Levin
Pipa, Gordon
author_sort Stojanović, Olivera
collection PubMed
description This paper presents a procedure for the patient-specific prediction of epileptic seizures. To this end, a combination of nonnegative matrix factorization (NMF) and smooth basis functions with robust regression is applied to power spectra of intracranial electroencephalographic (iEEG) signals. The resulting time and frequency components capture the dominant information from power spectra, while removing outliers and noise. This makes it possible to detect structure in preictal states, which is used for classification. Linear support vector machines (SVM) with L1 regularization are used to select and weigh the contributions from different number of not equally informative channels among patients. Due to class imbalance in data, synthetic minority over-sampling technique (SMOTE) is applied. The resulting method yields a computationally and conceptually simple, interpretable model of EEG signals of preictal and interictal states, which shows a good performance for the task of seizure prediction on two datasets (the EPILEPSIAE and on the public Epilepsyecosystem dataset).
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spelling pubmed-70019192020-02-18 Predicting epileptic seizures using nonnegative matrix factorization Stojanović, Olivera Kuhlmann, Levin Pipa, Gordon PLoS One Research Article This paper presents a procedure for the patient-specific prediction of epileptic seizures. To this end, a combination of nonnegative matrix factorization (NMF) and smooth basis functions with robust regression is applied to power spectra of intracranial electroencephalographic (iEEG) signals. The resulting time and frequency components capture the dominant information from power spectra, while removing outliers and noise. This makes it possible to detect structure in preictal states, which is used for classification. Linear support vector machines (SVM) with L1 regularization are used to select and weigh the contributions from different number of not equally informative channels among patients. Due to class imbalance in data, synthetic minority over-sampling technique (SMOTE) is applied. The resulting method yields a computationally and conceptually simple, interpretable model of EEG signals of preictal and interictal states, which shows a good performance for the task of seizure prediction on two datasets (the EPILEPSIAE and on the public Epilepsyecosystem dataset). Public Library of Science 2020-02-05 /pmc/articles/PMC7001919/ /pubmed/32023272 http://dx.doi.org/10.1371/journal.pone.0228025 Text en © 2020 Stojanović et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Stojanović, Olivera
Kuhlmann, Levin
Pipa, Gordon
Predicting epileptic seizures using nonnegative matrix factorization
title Predicting epileptic seizures using nonnegative matrix factorization
title_full Predicting epileptic seizures using nonnegative matrix factorization
title_fullStr Predicting epileptic seizures using nonnegative matrix factorization
title_full_unstemmed Predicting epileptic seizures using nonnegative matrix factorization
title_short Predicting epileptic seizures using nonnegative matrix factorization
title_sort predicting epileptic seizures using nonnegative matrix factorization
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7001919/
https://www.ncbi.nlm.nih.gov/pubmed/32023272
http://dx.doi.org/10.1371/journal.pone.0228025
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