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Predicting epileptic seizures using nonnegative matrix factorization
This paper presents a procedure for the patient-specific prediction of epileptic seizures. To this end, a combination of nonnegative matrix factorization (NMF) and smooth basis functions with robust regression is applied to power spectra of intracranial electroencephalographic (iEEG) signals. The re...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7001919/ https://www.ncbi.nlm.nih.gov/pubmed/32023272 http://dx.doi.org/10.1371/journal.pone.0228025 |
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author | Stojanović, Olivera Kuhlmann, Levin Pipa, Gordon |
author_facet | Stojanović, Olivera Kuhlmann, Levin Pipa, Gordon |
author_sort | Stojanović, Olivera |
collection | PubMed |
description | This paper presents a procedure for the patient-specific prediction of epileptic seizures. To this end, a combination of nonnegative matrix factorization (NMF) and smooth basis functions with robust regression is applied to power spectra of intracranial electroencephalographic (iEEG) signals. The resulting time and frequency components capture the dominant information from power spectra, while removing outliers and noise. This makes it possible to detect structure in preictal states, which is used for classification. Linear support vector machines (SVM) with L1 regularization are used to select and weigh the contributions from different number of not equally informative channels among patients. Due to class imbalance in data, synthetic minority over-sampling technique (SMOTE) is applied. The resulting method yields a computationally and conceptually simple, interpretable model of EEG signals of preictal and interictal states, which shows a good performance for the task of seizure prediction on two datasets (the EPILEPSIAE and on the public Epilepsyecosystem dataset). |
format | Online Article Text |
id | pubmed-7001919 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-70019192020-02-18 Predicting epileptic seizures using nonnegative matrix factorization Stojanović, Olivera Kuhlmann, Levin Pipa, Gordon PLoS One Research Article This paper presents a procedure for the patient-specific prediction of epileptic seizures. To this end, a combination of nonnegative matrix factorization (NMF) and smooth basis functions with robust regression is applied to power spectra of intracranial electroencephalographic (iEEG) signals. The resulting time and frequency components capture the dominant information from power spectra, while removing outliers and noise. This makes it possible to detect structure in preictal states, which is used for classification. Linear support vector machines (SVM) with L1 regularization are used to select and weigh the contributions from different number of not equally informative channels among patients. Due to class imbalance in data, synthetic minority over-sampling technique (SMOTE) is applied. The resulting method yields a computationally and conceptually simple, interpretable model of EEG signals of preictal and interictal states, which shows a good performance for the task of seizure prediction on two datasets (the EPILEPSIAE and on the public Epilepsyecosystem dataset). Public Library of Science 2020-02-05 /pmc/articles/PMC7001919/ /pubmed/32023272 http://dx.doi.org/10.1371/journal.pone.0228025 Text en © 2020 Stojanović et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Stojanović, Olivera Kuhlmann, Levin Pipa, Gordon Predicting epileptic seizures using nonnegative matrix factorization |
title | Predicting epileptic seizures using nonnegative matrix factorization |
title_full | Predicting epileptic seizures using nonnegative matrix factorization |
title_fullStr | Predicting epileptic seizures using nonnegative matrix factorization |
title_full_unstemmed | Predicting epileptic seizures using nonnegative matrix factorization |
title_short | Predicting epileptic seizures using nonnegative matrix factorization |
title_sort | predicting epileptic seizures using nonnegative matrix factorization |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7001919/ https://www.ncbi.nlm.nih.gov/pubmed/32023272 http://dx.doi.org/10.1371/journal.pone.0228025 |
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