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Screening and Identification of Key Biomarkers for Bladder Cancer: A Study Based on TCGA and GEO Data

Bladder cancer (BLCA) is a common malignant cancer, and it is the most common genitourinary cancer in the world. The recurrence rate is the highest of all cancers, and the treatment of BLCA has only slightly improved over the past 30 years. Genetic and environmental factors play an important role in...

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Autores principales: Xu, Yingkun, Wu, Guangzhen, Li, Jianyi, Li, Jiatong, Ruan, Ningke, Ma, Liye, Han, Xiaoyang, Wei, Yanjun, Li, Liang, Zhang, Hongge, Chen, Yougen, Xia, Qinghua
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7003274/
https://www.ncbi.nlm.nih.gov/pubmed/32047816
http://dx.doi.org/10.1155/2020/8283401
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author Xu, Yingkun
Wu, Guangzhen
Li, Jianyi
Li, Jiatong
Ruan, Ningke
Ma, Liye
Han, Xiaoyang
Wei, Yanjun
Li, Liang
Zhang, Hongge
Chen, Yougen
Xia, Qinghua
author_facet Xu, Yingkun
Wu, Guangzhen
Li, Jianyi
Li, Jiatong
Ruan, Ningke
Ma, Liye
Han, Xiaoyang
Wei, Yanjun
Li, Liang
Zhang, Hongge
Chen, Yougen
Xia, Qinghua
author_sort Xu, Yingkun
collection PubMed
description Bladder cancer (BLCA) is a common malignant cancer, and it is the most common genitourinary cancer in the world. The recurrence rate is the highest of all cancers, and the treatment of BLCA has only slightly improved over the past 30 years. Genetic and environmental factors play an important role in the development and progression of BLCA. However, the mechanism of cancer development remains to be proven. Therefore, the identification of potential oncogenes is urgent for developing new therapeutic directions and designing novel biomarkers for the diagnosis and prognosis of BLCA. Based on this need, we screened overlapping differentially expressed genes (DEG) from the GSE7476, GSE13507, and TCGA BLCA datasets. To identify the central genes from these DEGs, we performed a protein-protein interaction network analysis. To investigate the role of DEGs and the underlying mechanisms in BLCA, we performed Gene Ontology (GO) and Kyoto Gene and Genomic Encyclopedia (KEGG) analysis; we identified the hub genes via different evaluation methods in cytoHubba and then selected the target genes by performing survival analysis. Finally, the relationship between these target genes and tumour immunity was analysed to explore the roles of these genes. In summary, our current studies indicate that both cell division cycle 20 (CDC20) and abnormal spindle microtubule assembly (ASPM) genes are potential prognostic biomarkers for BLCA. It may also be a potential immunotherapeutic target with future clinical significance.
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spelling pubmed-70032742020-02-11 Screening and Identification of Key Biomarkers for Bladder Cancer: A Study Based on TCGA and GEO Data Xu, Yingkun Wu, Guangzhen Li, Jianyi Li, Jiatong Ruan, Ningke Ma, Liye Han, Xiaoyang Wei, Yanjun Li, Liang Zhang, Hongge Chen, Yougen Xia, Qinghua Biomed Res Int Research Article Bladder cancer (BLCA) is a common malignant cancer, and it is the most common genitourinary cancer in the world. The recurrence rate is the highest of all cancers, and the treatment of BLCA has only slightly improved over the past 30 years. Genetic and environmental factors play an important role in the development and progression of BLCA. However, the mechanism of cancer development remains to be proven. Therefore, the identification of potential oncogenes is urgent for developing new therapeutic directions and designing novel biomarkers for the diagnosis and prognosis of BLCA. Based on this need, we screened overlapping differentially expressed genes (DEG) from the GSE7476, GSE13507, and TCGA BLCA datasets. To identify the central genes from these DEGs, we performed a protein-protein interaction network analysis. To investigate the role of DEGs and the underlying mechanisms in BLCA, we performed Gene Ontology (GO) and Kyoto Gene and Genomic Encyclopedia (KEGG) analysis; we identified the hub genes via different evaluation methods in cytoHubba and then selected the target genes by performing survival analysis. Finally, the relationship between these target genes and tumour immunity was analysed to explore the roles of these genes. In summary, our current studies indicate that both cell division cycle 20 (CDC20) and abnormal spindle microtubule assembly (ASPM) genes are potential prognostic biomarkers for BLCA. It may also be a potential immunotherapeutic target with future clinical significance. Hindawi 2020-01-23 /pmc/articles/PMC7003274/ /pubmed/32047816 http://dx.doi.org/10.1155/2020/8283401 Text en Copyright © 2020 Yingkun Xu et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Xu, Yingkun
Wu, Guangzhen
Li, Jianyi
Li, Jiatong
Ruan, Ningke
Ma, Liye
Han, Xiaoyang
Wei, Yanjun
Li, Liang
Zhang, Hongge
Chen, Yougen
Xia, Qinghua
Screening and Identification of Key Biomarkers for Bladder Cancer: A Study Based on TCGA and GEO Data
title Screening and Identification of Key Biomarkers for Bladder Cancer: A Study Based on TCGA and GEO Data
title_full Screening and Identification of Key Biomarkers for Bladder Cancer: A Study Based on TCGA and GEO Data
title_fullStr Screening and Identification of Key Biomarkers for Bladder Cancer: A Study Based on TCGA and GEO Data
title_full_unstemmed Screening and Identification of Key Biomarkers for Bladder Cancer: A Study Based on TCGA and GEO Data
title_short Screening and Identification of Key Biomarkers for Bladder Cancer: A Study Based on TCGA and GEO Data
title_sort screening and identification of key biomarkers for bladder cancer: a study based on tcga and geo data
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7003274/
https://www.ncbi.nlm.nih.gov/pubmed/32047816
http://dx.doi.org/10.1155/2020/8283401
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