GeDi: applying suffix arrays to increase the repertoire of detectable SNVs in tumour genomes

BACKGROUND: Current popular variant calling pipelines rely on the mapping coordinates of each input read to a reference genome in order to detect variants. Since reads deriving from variant loci that diverge in sequence substantially from the reference are often assigned incorrect mapping coordinate...

Descripción completa

Detalles Bibliográficos
Autores principales: Coleman, Izaak, Corleone, Giacomo, Arram, James, Ng, Ho-Cheung, Magnani, Luca, Luk, Wayne
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2020
Materias:
Software
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7003401/
https://www.ncbi.nlm.nih.gov/pubmed/32024475
http://dx.doi.org/10.1186/s12859-020-3367-3

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7003401/
https://www.ncbi.nlm.nih.gov/pubmed/32024475
http://dx.doi.org/10.1186/s12859-020-3367-3

Ejemplares similares