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Machine learning with the hierarchy‐of‐hypotheses (HoH) approach discovers novel pattern in studies on biological invasions

Research synthesis on simple yet general hypotheses and ideas is challenging in scientific disciplines studying highly context‐dependent systems such as medical, social, and biological sciences. This study shows that machine learning, equation‐free statistical modeling of artificial intelligence, is...

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Autores principales: Ryo, Masahiro, Jeschke, Jonathan M., Rillig, Matthias C., Heger, Tina
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7003914/
https://www.ncbi.nlm.nih.gov/pubmed/31219681
http://dx.doi.org/10.1002/jrsm.1363
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author Ryo, Masahiro
Jeschke, Jonathan M.
Rillig, Matthias C.
Heger, Tina
author_facet Ryo, Masahiro
Jeschke, Jonathan M.
Rillig, Matthias C.
Heger, Tina
author_sort Ryo, Masahiro
collection PubMed
description Research synthesis on simple yet general hypotheses and ideas is challenging in scientific disciplines studying highly context‐dependent systems such as medical, social, and biological sciences. This study shows that machine learning, equation‐free statistical modeling of artificial intelligence, is a promising synthesis tool for discovering novel patterns and the source of controversy in a general hypothesis. We apply a decision tree algorithm, assuming that evidence from various contexts can be adequately integrated in a hierarchically nested structure. As a case study, we analyzed 163 articles that studied a prominent hypothesis in invasion biology, the enemy release hypothesis. We explored if any of the nine attributes that classify each study can differentiate conclusions as classification problem. Results corroborated that machine learning can be useful for research synthesis, as the algorithm could detect patterns that had been already focused in previous narrative reviews. Compared with the previous synthesis study that assessed the same evidence collection based on experts' judgement, the algorithm has newly proposed that the studies focusing on Asian regions mostly supported the hypothesis, suggesting that more detailed investigations in these regions can enhance our understanding of the hypothesis. We suggest that machine learning algorithms can be a promising synthesis tool especially where studies (a) reformulate a general hypothesis from different perspectives, (b) use different methods or variables, or (c) report insufficient information for conducting meta‐analyses.
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spelling pubmed-70039142020-02-11 Machine learning with the hierarchy‐of‐hypotheses (HoH) approach discovers novel pattern in studies on biological invasions Ryo, Masahiro Jeschke, Jonathan M. Rillig, Matthias C. Heger, Tina Res Synth Methods Research Articles Research synthesis on simple yet general hypotheses and ideas is challenging in scientific disciplines studying highly context‐dependent systems such as medical, social, and biological sciences. This study shows that machine learning, equation‐free statistical modeling of artificial intelligence, is a promising synthesis tool for discovering novel patterns and the source of controversy in a general hypothesis. We apply a decision tree algorithm, assuming that evidence from various contexts can be adequately integrated in a hierarchically nested structure. As a case study, we analyzed 163 articles that studied a prominent hypothesis in invasion biology, the enemy release hypothesis. We explored if any of the nine attributes that classify each study can differentiate conclusions as classification problem. Results corroborated that machine learning can be useful for research synthesis, as the algorithm could detect patterns that had been already focused in previous narrative reviews. Compared with the previous synthesis study that assessed the same evidence collection based on experts' judgement, the algorithm has newly proposed that the studies focusing on Asian regions mostly supported the hypothesis, suggesting that more detailed investigations in these regions can enhance our understanding of the hypothesis. We suggest that machine learning algorithms can be a promising synthesis tool especially where studies (a) reformulate a general hypothesis from different perspectives, (b) use different methods or variables, or (c) report insufficient information for conducting meta‐analyses. John Wiley and Sons Inc. 2019-08-05 2020-01 /pmc/articles/PMC7003914/ /pubmed/31219681 http://dx.doi.org/10.1002/jrsm.1363 Text en © 2019 The Authors Research Synthesis Methods Published by John Wiley & Sons Ltd This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Articles
Ryo, Masahiro
Jeschke, Jonathan M.
Rillig, Matthias C.
Heger, Tina
Machine learning with the hierarchy‐of‐hypotheses (HoH) approach discovers novel pattern in studies on biological invasions
title Machine learning with the hierarchy‐of‐hypotheses (HoH) approach discovers novel pattern in studies on biological invasions
title_full Machine learning with the hierarchy‐of‐hypotheses (HoH) approach discovers novel pattern in studies on biological invasions
title_fullStr Machine learning with the hierarchy‐of‐hypotheses (HoH) approach discovers novel pattern in studies on biological invasions
title_full_unstemmed Machine learning with the hierarchy‐of‐hypotheses (HoH) approach discovers novel pattern in studies on biological invasions
title_short Machine learning with the hierarchy‐of‐hypotheses (HoH) approach discovers novel pattern in studies on biological invasions
title_sort machine learning with the hierarchy‐of‐hypotheses (hoh) approach discovers novel pattern in studies on biological invasions
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7003914/
https://www.ncbi.nlm.nih.gov/pubmed/31219681
http://dx.doi.org/10.1002/jrsm.1363
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