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In situ structure determination at nanometer resolution using TYGRESS
The resolution of subtomogram averages calculated from cryo-electron tomograms (cryo-ET) of crowded cellular environments is often limited due to signal-loss in, and misalignment of the subtomograms. In contrast, single-particle cryo-electron microscopy (SP-cryo-EM) routinely reaches near-atomic res...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7004880/ https://www.ncbi.nlm.nih.gov/pubmed/31768058 http://dx.doi.org/10.1038/s41592-019-0651-0 |
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author | Song, Kangkang Shang, Zhiguo Fu, Xiaofeng Lou, Xiaochu Grigorieff, Nikolaus Nicastro, Daniela |
author_facet | Song, Kangkang Shang, Zhiguo Fu, Xiaofeng Lou, Xiaochu Grigorieff, Nikolaus Nicastro, Daniela |
author_sort | Song, Kangkang |
collection | PubMed |
description | The resolution of subtomogram averages calculated from cryo-electron tomograms (cryo-ET) of crowded cellular environments is often limited due to signal-loss in, and misalignment of the subtomograms. In contrast, single-particle cryo-electron microscopy (SP-cryo-EM) routinely reaches near-atomic resolution of isolated complexes. We have developed a method called “TomographY-Guided 3D REconstruction of Subcellular Structures” (TYGRESS) that is a hybrid of cryo-ET and SP-cryo-EM, and is able to achieve close-to-nanometer resolution of complexes inside crowded cellular environments. TYGRESS combines the advantages of SP-cryo-EM (images with good signal-to-noise ratio/contrast and minimal radiation damage) and subtomogram averaging (3D-alignment of macromolecules in a complex sample). Using TYGRESS, we determined the structure of the intact ciliary axoneme with up to 12 Å resolution. These results reveal many structural details that were not visible by cryo-ET. TYGRESS is generally applicable to cellular complexes that are amenable to subtomogram averaging, bringing us a step closer to (pseudo-)atomic models of cells. |
format | Online Article Text |
id | pubmed-7004880 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
record_format | MEDLINE/PubMed |
spelling | pubmed-70048802020-05-25 In situ structure determination at nanometer resolution using TYGRESS Song, Kangkang Shang, Zhiguo Fu, Xiaofeng Lou, Xiaochu Grigorieff, Nikolaus Nicastro, Daniela Nat Methods Article The resolution of subtomogram averages calculated from cryo-electron tomograms (cryo-ET) of crowded cellular environments is often limited due to signal-loss in, and misalignment of the subtomograms. In contrast, single-particle cryo-electron microscopy (SP-cryo-EM) routinely reaches near-atomic resolution of isolated complexes. We have developed a method called “TomographY-Guided 3D REconstruction of Subcellular Structures” (TYGRESS) that is a hybrid of cryo-ET and SP-cryo-EM, and is able to achieve close-to-nanometer resolution of complexes inside crowded cellular environments. TYGRESS combines the advantages of SP-cryo-EM (images with good signal-to-noise ratio/contrast and minimal radiation damage) and subtomogram averaging (3D-alignment of macromolecules in a complex sample). Using TYGRESS, we determined the structure of the intact ciliary axoneme with up to 12 Å resolution. These results reveal many structural details that were not visible by cryo-ET. TYGRESS is generally applicable to cellular complexes that are amenable to subtomogram averaging, bringing us a step closer to (pseudo-)atomic models of cells. 2019-11-25 2020-02 /pmc/articles/PMC7004880/ /pubmed/31768058 http://dx.doi.org/10.1038/s41592-019-0651-0 Text en Users may view, print, copy, and download text and data-mine the content in such documents, for the purposes of academic research, subject always to the full Conditions of use:http://www.nature.com/authors/editorial_policies/license.html#terms |
spellingShingle | Article Song, Kangkang Shang, Zhiguo Fu, Xiaofeng Lou, Xiaochu Grigorieff, Nikolaus Nicastro, Daniela In situ structure determination at nanometer resolution using TYGRESS |
title | In situ structure determination at nanometer resolution using TYGRESS |
title_full | In situ structure determination at nanometer resolution using TYGRESS |
title_fullStr | In situ structure determination at nanometer resolution using TYGRESS |
title_full_unstemmed | In situ structure determination at nanometer resolution using TYGRESS |
title_short | In situ structure determination at nanometer resolution using TYGRESS |
title_sort | in situ structure determination at nanometer resolution using tygress |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7004880/ https://www.ncbi.nlm.nih.gov/pubmed/31768058 http://dx.doi.org/10.1038/s41592-019-0651-0 |
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