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Deep Eutectic Solvents as Media for the Prebiotic DNA-Templated Synthesis of Peptides

Translation of genetic information into peptide products is one of the fundamental processes of biology. How this occurred prebiotically, in the absence of enzyme catalysts, is an intriguing question. Nucleic acid-templated synthesis (NATS) promotes reactions by bringing building blocks tethered to...

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Autores principales: Núñez-Pertíñez, Samuel, Wilks, Thomas R.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7005209/
https://www.ncbi.nlm.nih.gov/pubmed/32083058
http://dx.doi.org/10.3389/fchem.2020.00041
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author Núñez-Pertíñez, Samuel
Wilks, Thomas R.
author_facet Núñez-Pertíñez, Samuel
Wilks, Thomas R.
author_sort Núñez-Pertíñez, Samuel
collection PubMed
description Translation of genetic information into peptide products is one of the fundamental processes of biology. How this occurred prebiotically, in the absence of enzyme catalysts, is an intriguing question. Nucleic acid-templated synthesis (NATS) promotes reactions by bringing building blocks tethered to complementary DNA strands into close proximity and has been shown to enable peptide synthesis without enzymes—it could therefore serve as a model for prebiotic translation of information stored in nucleic acid sequences into functional peptides. The decomposition of highly reactive DNA adapters has so far limited the effectiveness of NATS, but these studies have been performed exclusively in aqueous solution. Deep eutectic solvents (DESs) have been proposed as a feasible solvent for prebiotic replication of nucleic acids, and here are studied as media for prebiotic translation using NATS as a model. DESs are shown to enhance the stability of DNA-conjugated activated esters, the precursors of peptides. However, this enhanced stability was coupled with decreased amine reactivity that hampered the formation of peptide bonds in DESs. These properties are exploited to demonstrate the storage of DNA-conjugated activated esters in a DES followed by transfer into aqueous buffer to activate the NATS of peptides “on demand.” These findings, together with the reported functions of DESs in prebiotic processes, shed light on how DESs could have facilitated the non-enzymatic translation of genetic information into functional peptides on the early Earth.
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spelling pubmed-70052092020-02-20 Deep Eutectic Solvents as Media for the Prebiotic DNA-Templated Synthesis of Peptides Núñez-Pertíñez, Samuel Wilks, Thomas R. Front Chem Chemistry Translation of genetic information into peptide products is one of the fundamental processes of biology. How this occurred prebiotically, in the absence of enzyme catalysts, is an intriguing question. Nucleic acid-templated synthesis (NATS) promotes reactions by bringing building blocks tethered to complementary DNA strands into close proximity and has been shown to enable peptide synthesis without enzymes—it could therefore serve as a model for prebiotic translation of information stored in nucleic acid sequences into functional peptides. The decomposition of highly reactive DNA adapters has so far limited the effectiveness of NATS, but these studies have been performed exclusively in aqueous solution. Deep eutectic solvents (DESs) have been proposed as a feasible solvent for prebiotic replication of nucleic acids, and here are studied as media for prebiotic translation using NATS as a model. DESs are shown to enhance the stability of DNA-conjugated activated esters, the precursors of peptides. However, this enhanced stability was coupled with decreased amine reactivity that hampered the formation of peptide bonds in DESs. These properties are exploited to demonstrate the storage of DNA-conjugated activated esters in a DES followed by transfer into aqueous buffer to activate the NATS of peptides “on demand.” These findings, together with the reported functions of DESs in prebiotic processes, shed light on how DESs could have facilitated the non-enzymatic translation of genetic information into functional peptides on the early Earth. Frontiers Media S.A. 2020-01-31 /pmc/articles/PMC7005209/ /pubmed/32083058 http://dx.doi.org/10.3389/fchem.2020.00041 Text en Copyright © 2020 Núñez-Pertíñez and Wilks. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Chemistry
Núñez-Pertíñez, Samuel
Wilks, Thomas R.
Deep Eutectic Solvents as Media for the Prebiotic DNA-Templated Synthesis of Peptides
title Deep Eutectic Solvents as Media for the Prebiotic DNA-Templated Synthesis of Peptides
title_full Deep Eutectic Solvents as Media for the Prebiotic DNA-Templated Synthesis of Peptides
title_fullStr Deep Eutectic Solvents as Media for the Prebiotic DNA-Templated Synthesis of Peptides
title_full_unstemmed Deep Eutectic Solvents as Media for the Prebiotic DNA-Templated Synthesis of Peptides
title_short Deep Eutectic Solvents as Media for the Prebiotic DNA-Templated Synthesis of Peptides
title_sort deep eutectic solvents as media for the prebiotic dna-templated synthesis of peptides
topic Chemistry
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7005209/
https://www.ncbi.nlm.nih.gov/pubmed/32083058
http://dx.doi.org/10.3389/fchem.2020.00041
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