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Non-poissonian Distribution of Point Mutations in DNA

In general, for chemical reactions occurring in systems, where fluctuations are not negligibly small, it is necessary to introduce a master equation for distribution of probability of fluctuations. It has been established that the monomolecular reactions of a type as A ↔ X are described by the maste...

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Autores principales: Turaeva, Nigora, Oksengendler, Boris L.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7005246/
https://www.ncbi.nlm.nih.gov/pubmed/32083056
http://dx.doi.org/10.3389/fchem.2020.00038
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author Turaeva, Nigora
Oksengendler, Boris L.
author_facet Turaeva, Nigora
Oksengendler, Boris L.
author_sort Turaeva, Nigora
collection PubMed
description In general, for chemical reactions occurring in systems, where fluctuations are not negligibly small, it is necessary to introduce a master equation for distribution of probability of fluctuations. It has been established that the monomolecular reactions of a type as A ↔ X are described by the master equation, which leads to a Poisson distribution with the variance equal to the average value N(0). However, the consideration of the Löwdin mechanism as autocatalytic non-linear chemical reactions such as A + X ↔ 2X and the corresponding master equation lead to a non-Poissonian probability distribution of fluctuations. In the presented work, first-order autocatalysis has been applied to the Löwdin's mechanism of spontaneous mutations in DNA. Describing double proton transfers between complimentary nucleotide bases along the chain by first-order autocatalytic reactions, the corresponding master equation for protons in tautomeric states becomes non-linear, and at non-equilibrium conditions this leads to the non-Poissonian distribution of spontaneous mutations in DNA. It is also suggested that the accumulation of large fluctuations of successive cooperative concerted protons along the chain may produce higher non-linearities which could have a significant impact on some biochemical processes, occurring in DNA.
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spelling pubmed-70052462020-02-20 Non-poissonian Distribution of Point Mutations in DNA Turaeva, Nigora Oksengendler, Boris L. Front Chem Chemistry In general, for chemical reactions occurring in systems, where fluctuations are not negligibly small, it is necessary to introduce a master equation for distribution of probability of fluctuations. It has been established that the monomolecular reactions of a type as A ↔ X are described by the master equation, which leads to a Poisson distribution with the variance equal to the average value N(0). However, the consideration of the Löwdin mechanism as autocatalytic non-linear chemical reactions such as A + X ↔ 2X and the corresponding master equation lead to a non-Poissonian probability distribution of fluctuations. In the presented work, first-order autocatalysis has been applied to the Löwdin's mechanism of spontaneous mutations in DNA. Describing double proton transfers between complimentary nucleotide bases along the chain by first-order autocatalytic reactions, the corresponding master equation for protons in tautomeric states becomes non-linear, and at non-equilibrium conditions this leads to the non-Poissonian distribution of spontaneous mutations in DNA. It is also suggested that the accumulation of large fluctuations of successive cooperative concerted protons along the chain may produce higher non-linearities which could have a significant impact on some biochemical processes, occurring in DNA. Frontiers Media S.A. 2020-01-31 /pmc/articles/PMC7005246/ /pubmed/32083056 http://dx.doi.org/10.3389/fchem.2020.00038 Text en Copyright © 2020 Turaeva and Oksengendler. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Chemistry
Turaeva, Nigora
Oksengendler, Boris L.
Non-poissonian Distribution of Point Mutations in DNA
title Non-poissonian Distribution of Point Mutations in DNA
title_full Non-poissonian Distribution of Point Mutations in DNA
title_fullStr Non-poissonian Distribution of Point Mutations in DNA
title_full_unstemmed Non-poissonian Distribution of Point Mutations in DNA
title_short Non-poissonian Distribution of Point Mutations in DNA
title_sort non-poissonian distribution of point mutations in dna
topic Chemistry
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7005246/
https://www.ncbi.nlm.nih.gov/pubmed/32083056
http://dx.doi.org/10.3389/fchem.2020.00038
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