Cargando…

Lessons learned from expanded reproductive carrier screening in self‐reported Ashkenazi, Sephardi, and Mizrahi Jewish patients

BACKGROUND: Next‐generation sequencing (NGS)‐based panels have gained traction as a strategy for reproductive carrier screening. Their value for screening Ashkenazi Jewish (AJ) individuals, who have benefited greatly from population‐wide targeted testing, as well as Sephardi/Mizrahi Jewish (SMJ) ind...

Descripción completa

Detalles Bibliográficos
Autores principales: Akler, Gidon, Birch, Ashley H., Schreiber‐Agus, Nicole, Cai, Xiaoqiang, Cai, Guiqing, Shi, Lisong, Yu, Chunli, Larmore, Anastasia M., Mendiratta‐Vij, Geetu, Elkhoury, Lama, Dillon, Mitchell W., Zhu, Jun, Mclellan, Andrew S., Suer, Funda E., Webb, Bryn D., Schadt, Eric E., Kornreich, Ruth, Edelmann, Lisa
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7005669/
https://www.ncbi.nlm.nih.gov/pubmed/31880409
http://dx.doi.org/10.1002/mgg3.1053
_version_ 1783494986574069760
author Akler, Gidon
Birch, Ashley H.
Schreiber‐Agus, Nicole
Cai, Xiaoqiang
Cai, Guiqing
Shi, Lisong
Yu, Chunli
Larmore, Anastasia M.
Mendiratta‐Vij, Geetu
Elkhoury, Lama
Dillon, Mitchell W.
Zhu, Jun
Mclellan, Andrew S.
Suer, Funda E.
Webb, Bryn D.
Schadt, Eric E.
Kornreich, Ruth
Edelmann, Lisa
author_facet Akler, Gidon
Birch, Ashley H.
Schreiber‐Agus, Nicole
Cai, Xiaoqiang
Cai, Guiqing
Shi, Lisong
Yu, Chunli
Larmore, Anastasia M.
Mendiratta‐Vij, Geetu
Elkhoury, Lama
Dillon, Mitchell W.
Zhu, Jun
Mclellan, Andrew S.
Suer, Funda E.
Webb, Bryn D.
Schadt, Eric E.
Kornreich, Ruth
Edelmann, Lisa
author_sort Akler, Gidon
collection PubMed
description BACKGROUND: Next‐generation sequencing (NGS)‐based panels have gained traction as a strategy for reproductive carrier screening. Their value for screening Ashkenazi Jewish (AJ) individuals, who have benefited greatly from population‐wide targeted testing, as well as Sephardi/Mizrahi Jewish (SMJ) individuals (an underserved population), has not been fully explored. METHODS: The clinical utilization by 6,805 self‐reported Jewish individuals of an expanded NGS panel, along with several ancillary assays, was assessed retrospectively. Data were extracted for a subset of 96 diseases that, during the panel design phase, were classified as being AJ‐, SMJ‐, or pan‐Jewish/pan‐ethnic‐relevant. RESULTS: 64.6% of individuals were identified as carriers of one or more of these 96 diseases. Over 80% of the reported variants would have been missed by following recommended AJ screening guidelines. 10.7% of variants reported for AJs were in “SMJ‐relevant genes,” and 31.2% reported for SMJs were in “AJ‐relevant genes.” Roughly 2.5% of individuals carried a novel, likely pathogenic variant. One in 16 linked cohort couples was identified as a carrier couple for at least one of these 96 diseases. CONCLUSION: For maximal carrier identification, this study supports using expanded NGS panels for individuals of all Jewish backgrounds. This approach can better empower at‐risk couples for reproductive decision making.
format Online
Article
Text
id pubmed-7005669
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher John Wiley and Sons Inc.
record_format MEDLINE/PubMed
spelling pubmed-70056692020-02-13 Lessons learned from expanded reproductive carrier screening in self‐reported Ashkenazi, Sephardi, and Mizrahi Jewish patients Akler, Gidon Birch, Ashley H. Schreiber‐Agus, Nicole Cai, Xiaoqiang Cai, Guiqing Shi, Lisong Yu, Chunli Larmore, Anastasia M. Mendiratta‐Vij, Geetu Elkhoury, Lama Dillon, Mitchell W. Zhu, Jun Mclellan, Andrew S. Suer, Funda E. Webb, Bryn D. Schadt, Eric E. Kornreich, Ruth Edelmann, Lisa Mol Genet Genomic Med Original Articles BACKGROUND: Next‐generation sequencing (NGS)‐based panels have gained traction as a strategy for reproductive carrier screening. Their value for screening Ashkenazi Jewish (AJ) individuals, who have benefited greatly from population‐wide targeted testing, as well as Sephardi/Mizrahi Jewish (SMJ) individuals (an underserved population), has not been fully explored. METHODS: The clinical utilization by 6,805 self‐reported Jewish individuals of an expanded NGS panel, along with several ancillary assays, was assessed retrospectively. Data were extracted for a subset of 96 diseases that, during the panel design phase, were classified as being AJ‐, SMJ‐, or pan‐Jewish/pan‐ethnic‐relevant. RESULTS: 64.6% of individuals were identified as carriers of one or more of these 96 diseases. Over 80% of the reported variants would have been missed by following recommended AJ screening guidelines. 10.7% of variants reported for AJs were in “SMJ‐relevant genes,” and 31.2% reported for SMJs were in “AJ‐relevant genes.” Roughly 2.5% of individuals carried a novel, likely pathogenic variant. One in 16 linked cohort couples was identified as a carrier couple for at least one of these 96 diseases. CONCLUSION: For maximal carrier identification, this study supports using expanded NGS panels for individuals of all Jewish backgrounds. This approach can better empower at‐risk couples for reproductive decision making. John Wiley and Sons Inc. 2019-12-27 /pmc/articles/PMC7005669/ /pubmed/31880409 http://dx.doi.org/10.1002/mgg3.1053 Text en © 2019 Sema4. Molecular Genetics & Genomic Medicine published by Wiley Periodicals, Inc. This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made.
spellingShingle Original Articles
Akler, Gidon
Birch, Ashley H.
Schreiber‐Agus, Nicole
Cai, Xiaoqiang
Cai, Guiqing
Shi, Lisong
Yu, Chunli
Larmore, Anastasia M.
Mendiratta‐Vij, Geetu
Elkhoury, Lama
Dillon, Mitchell W.
Zhu, Jun
Mclellan, Andrew S.
Suer, Funda E.
Webb, Bryn D.
Schadt, Eric E.
Kornreich, Ruth
Edelmann, Lisa
Lessons learned from expanded reproductive carrier screening in self‐reported Ashkenazi, Sephardi, and Mizrahi Jewish patients
title Lessons learned from expanded reproductive carrier screening in self‐reported Ashkenazi, Sephardi, and Mizrahi Jewish patients
title_full Lessons learned from expanded reproductive carrier screening in self‐reported Ashkenazi, Sephardi, and Mizrahi Jewish patients
title_fullStr Lessons learned from expanded reproductive carrier screening in self‐reported Ashkenazi, Sephardi, and Mizrahi Jewish patients
title_full_unstemmed Lessons learned from expanded reproductive carrier screening in self‐reported Ashkenazi, Sephardi, and Mizrahi Jewish patients
title_short Lessons learned from expanded reproductive carrier screening in self‐reported Ashkenazi, Sephardi, and Mizrahi Jewish patients
title_sort lessons learned from expanded reproductive carrier screening in self‐reported ashkenazi, sephardi, and mizrahi jewish patients
topic Original Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7005669/
https://www.ncbi.nlm.nih.gov/pubmed/31880409
http://dx.doi.org/10.1002/mgg3.1053
work_keys_str_mv AT aklergidon lessonslearnedfromexpandedreproductivecarrierscreeninginselfreportedashkenazisephardiandmizrahijewishpatients
AT birchashleyh lessonslearnedfromexpandedreproductivecarrierscreeninginselfreportedashkenazisephardiandmizrahijewishpatients
AT schreiberagusnicole lessonslearnedfromexpandedreproductivecarrierscreeninginselfreportedashkenazisephardiandmizrahijewishpatients
AT caixiaoqiang lessonslearnedfromexpandedreproductivecarrierscreeninginselfreportedashkenazisephardiandmizrahijewishpatients
AT caiguiqing lessonslearnedfromexpandedreproductivecarrierscreeninginselfreportedashkenazisephardiandmizrahijewishpatients
AT shilisong lessonslearnedfromexpandedreproductivecarrierscreeninginselfreportedashkenazisephardiandmizrahijewishpatients
AT yuchunli lessonslearnedfromexpandedreproductivecarrierscreeninginselfreportedashkenazisephardiandmizrahijewishpatients
AT larmoreanastasiam lessonslearnedfromexpandedreproductivecarrierscreeninginselfreportedashkenazisephardiandmizrahijewishpatients
AT mendirattavijgeetu lessonslearnedfromexpandedreproductivecarrierscreeninginselfreportedashkenazisephardiandmizrahijewishpatients
AT elkhourylama lessonslearnedfromexpandedreproductivecarrierscreeninginselfreportedashkenazisephardiandmizrahijewishpatients
AT dillonmitchellw lessonslearnedfromexpandedreproductivecarrierscreeninginselfreportedashkenazisephardiandmizrahijewishpatients
AT zhujun lessonslearnedfromexpandedreproductivecarrierscreeninginselfreportedashkenazisephardiandmizrahijewishpatients
AT mclellanandrews lessonslearnedfromexpandedreproductivecarrierscreeninginselfreportedashkenazisephardiandmizrahijewishpatients
AT suerfundae lessonslearnedfromexpandedreproductivecarrierscreeninginselfreportedashkenazisephardiandmizrahijewishpatients
AT webbbrynd lessonslearnedfromexpandedreproductivecarrierscreeninginselfreportedashkenazisephardiandmizrahijewishpatients
AT schadterice lessonslearnedfromexpandedreproductivecarrierscreeninginselfreportedashkenazisephardiandmizrahijewishpatients
AT kornreichruth lessonslearnedfromexpandedreproductivecarrierscreeninginselfreportedashkenazisephardiandmizrahijewishpatients
AT edelmannlisa lessonslearnedfromexpandedreproductivecarrierscreeninginselfreportedashkenazisephardiandmizrahijewishpatients