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Bridging global and local topology in whole-brain networks using the network statistic jackknife
Whole-brain network analysis is commonly used to investigate the topology of the brain using a variety of neuroimaging modalities. This approach is notable for its applicability to a large number of domains, such as understanding how brain network organization relates to cognition and behavior and e...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MIT Press
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7006875/ https://www.ncbi.nlm.nih.gov/pubmed/32043044 http://dx.doi.org/10.1162/netn_a_00109 |
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author | Henry, Teague R. Duffy, Kelly A. Rudolph, Marc D. Nebel, Mary Beth Mostofsky, Stewart H. Cohen, Jessica R. |
author_facet | Henry, Teague R. Duffy, Kelly A. Rudolph, Marc D. Nebel, Mary Beth Mostofsky, Stewart H. Cohen, Jessica R. |
author_sort | Henry, Teague R. |
collection | PubMed |
description | Whole-brain network analysis is commonly used to investigate the topology of the brain using a variety of neuroimaging modalities. This approach is notable for its applicability to a large number of domains, such as understanding how brain network organization relates to cognition and behavior and examining disrupted brain network organization in disease. A benefit to this approach is the ability to summarize overall brain network organization with a single metric (e.g., global efficiency). However, important local differences in network structure might exist without any corresponding observable differences in global topology, making a whole-brain analysis strategy unlikely to detect relevant local findings. Conversely, using local network metrics can identify local differences, but are not directly informative of differences in global topology. Here, we propose the network statistic (NS) jackknife framework, a simulated lesioning method that combines the utility of global network analysis strategies with the ability to detect relevant local differences in network structure. We evaluate the NS jackknife framework with a simulation study and an empirical example comparing global efficiency in children with attention-deficit/hyperactivity disorder (ADHD) and typically developing (TD) children. The NS jackknife framework has been implemented in a public, open-source R package, netjack, available at https://cran.r-project.org/package=netjack. |
format | Online Article Text |
id | pubmed-7006875 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | MIT Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-70068752020-02-10 Bridging global and local topology in whole-brain networks using the network statistic jackknife Henry, Teague R. Duffy, Kelly A. Rudolph, Marc D. Nebel, Mary Beth Mostofsky, Stewart H. Cohen, Jessica R. Netw Neurosci Methods Whole-brain network analysis is commonly used to investigate the topology of the brain using a variety of neuroimaging modalities. This approach is notable for its applicability to a large number of domains, such as understanding how brain network organization relates to cognition and behavior and examining disrupted brain network organization in disease. A benefit to this approach is the ability to summarize overall brain network organization with a single metric (e.g., global efficiency). However, important local differences in network structure might exist without any corresponding observable differences in global topology, making a whole-brain analysis strategy unlikely to detect relevant local findings. Conversely, using local network metrics can identify local differences, but are not directly informative of differences in global topology. Here, we propose the network statistic (NS) jackknife framework, a simulated lesioning method that combines the utility of global network analysis strategies with the ability to detect relevant local differences in network structure. We evaluate the NS jackknife framework with a simulation study and an empirical example comparing global efficiency in children with attention-deficit/hyperactivity disorder (ADHD) and typically developing (TD) children. The NS jackknife framework has been implemented in a public, open-source R package, netjack, available at https://cran.r-project.org/package=netjack. MIT Press 2020-02-01 /pmc/articles/PMC7006875/ /pubmed/32043044 http://dx.doi.org/10.1162/netn_a_00109 Text en © 2019 Massachusetts Institute of Technology This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. For a full description of the license, please visit https://creativecommons.org/licenses/by/4.0/legalcode. |
spellingShingle | Methods Henry, Teague R. Duffy, Kelly A. Rudolph, Marc D. Nebel, Mary Beth Mostofsky, Stewart H. Cohen, Jessica R. Bridging global and local topology in whole-brain networks using the network statistic jackknife |
title | Bridging global and local topology in whole-brain networks using the network statistic jackknife |
title_full | Bridging global and local topology in whole-brain networks using the network statistic jackknife |
title_fullStr | Bridging global and local topology in whole-brain networks using the network statistic jackknife |
title_full_unstemmed | Bridging global and local topology in whole-brain networks using the network statistic jackknife |
title_short | Bridging global and local topology in whole-brain networks using the network statistic jackknife |
title_sort | bridging global and local topology in whole-brain networks using the network statistic jackknife |
topic | Methods |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7006875/ https://www.ncbi.nlm.nih.gov/pubmed/32043044 http://dx.doi.org/10.1162/netn_a_00109 |
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