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Log transformation of proficiency testing data on the content of genetically modified organisms in food and feed samples: is it justified?

The outcome of proficiency tests (PTs) is influenced, among others, by the evaluation procedure chosen by the PT provider. In particular for PTs on GMO testing a log-data transformation is often applied to fit skewed data distributions into a normal distribution. The study presented here has challen...

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Autores principales: Broothaerts, Wim, Cordeiro, Fernando, Corbisier, Philippe, Robouch, Piotr, Emons, Hendrik
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Berlin Heidelberg 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7007444/
https://www.ncbi.nlm.nih.gov/pubmed/31863124
http://dx.doi.org/10.1007/s00216-019-02338-4
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author Broothaerts, Wim
Cordeiro, Fernando
Corbisier, Philippe
Robouch, Piotr
Emons, Hendrik
author_facet Broothaerts, Wim
Cordeiro, Fernando
Corbisier, Philippe
Robouch, Piotr
Emons, Hendrik
author_sort Broothaerts, Wim
collection PubMed
description The outcome of proficiency tests (PTs) is influenced, among others, by the evaluation procedure chosen by the PT provider. In particular for PTs on GMO testing a log-data transformation is often applied to fit skewed data distributions into a normal distribution. The study presented here has challenged this commonly applied approach. The 56 data populations from proficiency testing rounds organised since 2010 by the European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF) were used to investigate the assumption of a normal distribution of reported results within a PT. Statistical evaluation of the data distributions, composed of 3178 reported results, revealed that 41 of the 56 datasets showed indeed a normal distribution. For 10 datasets, the deviation from normality was not statistically significant at the raw or log scale, indicating that the normality assumption cannot be rejected. The normality of the five remaining datasets was statistically significant after log-data transformation. These datasets, however, appeared to be multimodal as a result of technical/experimental issues with the applied methods. On the basis of the real datasets analysed herein, it is concluded that the log transformation of reported data in proficiency testing rounds is often not necessary and should be cautiously applied. It is further shown that the log-data transformation, when applied to PT results, favours the positive performance scoring for overestimated results and strongly penalises underestimated results. The evaluation of the participants’ performance without prior transformation of their results may highlight rather than hide relevant underlying analytical problems and is recommended as an outcome of this study. [Figure: see text]
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spelling pubmed-70074442020-02-24 Log transformation of proficiency testing data on the content of genetically modified organisms in food and feed samples: is it justified? Broothaerts, Wim Cordeiro, Fernando Corbisier, Philippe Robouch, Piotr Emons, Hendrik Anal Bioanal Chem Research Paper The outcome of proficiency tests (PTs) is influenced, among others, by the evaluation procedure chosen by the PT provider. In particular for PTs on GMO testing a log-data transformation is often applied to fit skewed data distributions into a normal distribution. The study presented here has challenged this commonly applied approach. The 56 data populations from proficiency testing rounds organised since 2010 by the European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF) were used to investigate the assumption of a normal distribution of reported results within a PT. Statistical evaluation of the data distributions, composed of 3178 reported results, revealed that 41 of the 56 datasets showed indeed a normal distribution. For 10 datasets, the deviation from normality was not statistically significant at the raw or log scale, indicating that the normality assumption cannot be rejected. The normality of the five remaining datasets was statistically significant after log-data transformation. These datasets, however, appeared to be multimodal as a result of technical/experimental issues with the applied methods. On the basis of the real datasets analysed herein, it is concluded that the log transformation of reported data in proficiency testing rounds is often not necessary and should be cautiously applied. It is further shown that the log-data transformation, when applied to PT results, favours the positive performance scoring for overestimated results and strongly penalises underestimated results. The evaluation of the participants’ performance without prior transformation of their results may highlight rather than hide relevant underlying analytical problems and is recommended as an outcome of this study. [Figure: see text] Springer Berlin Heidelberg 2019-12-21 2020 /pmc/articles/PMC7007444/ /pubmed/31863124 http://dx.doi.org/10.1007/s00216-019-02338-4 Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Research Paper
Broothaerts, Wim
Cordeiro, Fernando
Corbisier, Philippe
Robouch, Piotr
Emons, Hendrik
Log transformation of proficiency testing data on the content of genetically modified organisms in food and feed samples: is it justified?
title Log transformation of proficiency testing data on the content of genetically modified organisms in food and feed samples: is it justified?
title_full Log transformation of proficiency testing data on the content of genetically modified organisms in food and feed samples: is it justified?
title_fullStr Log transformation of proficiency testing data on the content of genetically modified organisms in food and feed samples: is it justified?
title_full_unstemmed Log transformation of proficiency testing data on the content of genetically modified organisms in food and feed samples: is it justified?
title_short Log transformation of proficiency testing data on the content of genetically modified organisms in food and feed samples: is it justified?
title_sort log transformation of proficiency testing data on the content of genetically modified organisms in food and feed samples: is it justified?
topic Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7007444/
https://www.ncbi.nlm.nih.gov/pubmed/31863124
http://dx.doi.org/10.1007/s00216-019-02338-4
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