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Chitin degradation potential and whole-genome sequence of Streptomyces diastaticus strain CS1801
The aim of this study was to evaluate the chitin degradation potential and whole-genome sequence of Streptomyces diastaticus strain CS1801, which had been screened out in our previous work. The results of fermentation revealed that CS1801 can convert the chitin derived from crab shells, colloidal ch...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer Berlin Heidelberg
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7007918/ https://www.ncbi.nlm.nih.gov/pubmed/32036475 http://dx.doi.org/10.1186/s13568-020-0963-6 |
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author | Xu, Tiantian Qi, Manting Liu, Haiying Cao, Dan Xu, Chenlei Wang, Limei Qi, Bin |
author_facet | Xu, Tiantian Qi, Manting Liu, Haiying Cao, Dan Xu, Chenlei Wang, Limei Qi, Bin |
author_sort | Xu, Tiantian |
collection | PubMed |
description | The aim of this study was to evaluate the chitin degradation potential and whole-genome sequence of Streptomyces diastaticus strain CS1801, which had been screened out in our previous work. The results of fermentation revealed that CS1801 can convert the chitin derived from crab shells, colloidal chitin and N-acetylglucosamine to chitooligosaccharide. Additional genome-wide analysis of CS1801 was also performed to explore the genomic basis for chitin degradation. The results showed that CS1801 possesses a chromosome with 5,611,479 bp (73% GC) and a plasmid with 1,388,284 bp (73% GC). The CS1801 genome consists of 7584 protein-coding genes, 90 tRNA and 21 rRNA operons. In addition, the results of genomic CAZyme analysis indicated that CS1801 comprises 103 glycoside hydrolase family genes, which could regulate the glycoside hydrolases that contribute to chitin degradation. The whole-genome information of CS1801 could highlight the mechanism underlying the chitin degradation activity of CS1801, strongly indicating that CS1801 is characterized by a substantial number of genes encoding chitinases and the complete metabolic pathway of chitin, conferring CS1801 with promising potential applicability in chitooligosaccharide production. |
format | Online Article Text |
id | pubmed-7007918 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Springer Berlin Heidelberg |
record_format | MEDLINE/PubMed |
spelling | pubmed-70079182020-02-24 Chitin degradation potential and whole-genome sequence of Streptomyces diastaticus strain CS1801 Xu, Tiantian Qi, Manting Liu, Haiying Cao, Dan Xu, Chenlei Wang, Limei Qi, Bin AMB Express Original Article The aim of this study was to evaluate the chitin degradation potential and whole-genome sequence of Streptomyces diastaticus strain CS1801, which had been screened out in our previous work. The results of fermentation revealed that CS1801 can convert the chitin derived from crab shells, colloidal chitin and N-acetylglucosamine to chitooligosaccharide. Additional genome-wide analysis of CS1801 was also performed to explore the genomic basis for chitin degradation. The results showed that CS1801 possesses a chromosome with 5,611,479 bp (73% GC) and a plasmid with 1,388,284 bp (73% GC). The CS1801 genome consists of 7584 protein-coding genes, 90 tRNA and 21 rRNA operons. In addition, the results of genomic CAZyme analysis indicated that CS1801 comprises 103 glycoside hydrolase family genes, which could regulate the glycoside hydrolases that contribute to chitin degradation. The whole-genome information of CS1801 could highlight the mechanism underlying the chitin degradation activity of CS1801, strongly indicating that CS1801 is characterized by a substantial number of genes encoding chitinases and the complete metabolic pathway of chitin, conferring CS1801 with promising potential applicability in chitooligosaccharide production. Springer Berlin Heidelberg 2020-02-08 /pmc/articles/PMC7007918/ /pubmed/32036475 http://dx.doi.org/10.1186/s13568-020-0963-6 Text en © The Author(s) 2020 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Original Article Xu, Tiantian Qi, Manting Liu, Haiying Cao, Dan Xu, Chenlei Wang, Limei Qi, Bin Chitin degradation potential and whole-genome sequence of Streptomyces diastaticus strain CS1801 |
title | Chitin degradation potential and whole-genome sequence of Streptomyces diastaticus strain CS1801 |
title_full | Chitin degradation potential and whole-genome sequence of Streptomyces diastaticus strain CS1801 |
title_fullStr | Chitin degradation potential and whole-genome sequence of Streptomyces diastaticus strain CS1801 |
title_full_unstemmed | Chitin degradation potential and whole-genome sequence of Streptomyces diastaticus strain CS1801 |
title_short | Chitin degradation potential and whole-genome sequence of Streptomyces diastaticus strain CS1801 |
title_sort | chitin degradation potential and whole-genome sequence of streptomyces diastaticus strain cs1801 |
topic | Original Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7007918/ https://www.ncbi.nlm.nih.gov/pubmed/32036475 http://dx.doi.org/10.1186/s13568-020-0963-6 |
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