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USVSEG: A robust method for segmentation of ultrasonic vocalizations in rodents

Rodents’ ultrasonic vocalizations (USVs) provide useful information for assessing their social behaviors. Despite previous efforts in classifying subcategories of time-frequency patterns of USV syllables to study their functional relevance, methods for detecting vocal elements from continuously reco...

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Autores principales: Tachibana, Ryosuke O., Kanno, Kouta, Okabe, Shota, Kobayasi, Kohta I., Okanoya, Kazuo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7010259/
https://www.ncbi.nlm.nih.gov/pubmed/32040540
http://dx.doi.org/10.1371/journal.pone.0228907
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author Tachibana, Ryosuke O.
Kanno, Kouta
Okabe, Shota
Kobayasi, Kohta I.
Okanoya, Kazuo
author_facet Tachibana, Ryosuke O.
Kanno, Kouta
Okabe, Shota
Kobayasi, Kohta I.
Okanoya, Kazuo
author_sort Tachibana, Ryosuke O.
collection PubMed
description Rodents’ ultrasonic vocalizations (USVs) provide useful information for assessing their social behaviors. Despite previous efforts in classifying subcategories of time-frequency patterns of USV syllables to study their functional relevance, methods for detecting vocal elements from continuously recorded data have remained sub-optimal. Here, we propose a novel procedure for detecting USV segments in continuous sound data containing background noise recorded during the observation of social behavior. The proposed procedure utilizes a stable version of the sound spectrogram and additional signal processing for better separation of vocal signals by reducing the variation of the background noise. Our procedure also provides precise time tracking of spectral peaks within each syllable. We demonstrated that this procedure can be applied to a variety of USVs obtained from several rodent species. Performance tests showed this method had greater accuracy in detecting USV syllables than conventional detection methods.
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spelling pubmed-70102592020-02-21 USVSEG: A robust method for segmentation of ultrasonic vocalizations in rodents Tachibana, Ryosuke O. Kanno, Kouta Okabe, Shota Kobayasi, Kohta I. Okanoya, Kazuo PLoS One Research Article Rodents’ ultrasonic vocalizations (USVs) provide useful information for assessing their social behaviors. Despite previous efforts in classifying subcategories of time-frequency patterns of USV syllables to study their functional relevance, methods for detecting vocal elements from continuously recorded data have remained sub-optimal. Here, we propose a novel procedure for detecting USV segments in continuous sound data containing background noise recorded during the observation of social behavior. The proposed procedure utilizes a stable version of the sound spectrogram and additional signal processing for better separation of vocal signals by reducing the variation of the background noise. Our procedure also provides precise time tracking of spectral peaks within each syllable. We demonstrated that this procedure can be applied to a variety of USVs obtained from several rodent species. Performance tests showed this method had greater accuracy in detecting USV syllables than conventional detection methods. Public Library of Science 2020-02-10 /pmc/articles/PMC7010259/ /pubmed/32040540 http://dx.doi.org/10.1371/journal.pone.0228907 Text en © 2020 Tachibana et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Tachibana, Ryosuke O.
Kanno, Kouta
Okabe, Shota
Kobayasi, Kohta I.
Okanoya, Kazuo
USVSEG: A robust method for segmentation of ultrasonic vocalizations in rodents
title USVSEG: A robust method for segmentation of ultrasonic vocalizations in rodents
title_full USVSEG: A robust method for segmentation of ultrasonic vocalizations in rodents
title_fullStr USVSEG: A robust method for segmentation of ultrasonic vocalizations in rodents
title_full_unstemmed USVSEG: A robust method for segmentation of ultrasonic vocalizations in rodents
title_short USVSEG: A robust method for segmentation of ultrasonic vocalizations in rodents
title_sort usvseg: a robust method for segmentation of ultrasonic vocalizations in rodents
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7010259/
https://www.ncbi.nlm.nih.gov/pubmed/32040540
http://dx.doi.org/10.1371/journal.pone.0228907
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