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DMENet: Diabetic Macular Edema diagnosis using Hierarchical Ensemble of CNNs

Diabetic Macular Edema (DME) is an advanced stage of Diabetic Retinopathy (DR) and can lead to permanent vision loss. Currently, it affects 26.7 million people globally and on account of such a huge number of DME cases and the limited number of ophthalmologists, it is desirable to automate the diagn...

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Autores principales: Singh, Rajeev Kumar, Gorantla, Rohan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7010263/
https://www.ncbi.nlm.nih.gov/pubmed/32040475
http://dx.doi.org/10.1371/journal.pone.0220677
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author Singh, Rajeev Kumar
Gorantla, Rohan
author_facet Singh, Rajeev Kumar
Gorantla, Rohan
author_sort Singh, Rajeev Kumar
collection PubMed
description Diabetic Macular Edema (DME) is an advanced stage of Diabetic Retinopathy (DR) and can lead to permanent vision loss. Currently, it affects 26.7 million people globally and on account of such a huge number of DME cases and the limited number of ophthalmologists, it is desirable to automate the diagnosis process. Computer-assisted, deep learning based diagnosis could help in early detection, following which precision medication can help to mitigate the vision loss. Method: In order to automate the screening of DME, we propose a novel DMENet Algorithm which is built on the pillars of Convolutional Neural Networks (CNNs). DMENet analyses the preprocessed color fundus images and passes it through a two-stage pipeline. The first stage detects the presence or absence of DME whereas the second stage takes only the positive cases and grades the images based on severity. In both the stages, we use a novel Hierarchical Ensemble of CNNs (HE-CNN). This paper uses two of the popular publicly available datasets IDRiD and MESSIDOR for classification. Preprocessing on the images is performed using morphological opening and gaussian kernel. The dataset is augmented to solve the class imbalance problem for better performance of the proposed model. Results: The proposed methodology achieved an average Accuracy of 96.12%, Sensitivity of 96.32%, Specificity of 95.84%, and F−1 score of 0.9609 on MESSIDOR and IDRiD datasets. Conclusion: These excellent results establish the validity of the proposed methodology for use in DME screening and solidifies the applicability of the HE-CNN classification technique in the domain of biomedical imaging.
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spelling pubmed-70102632020-02-21 DMENet: Diabetic Macular Edema diagnosis using Hierarchical Ensemble of CNNs Singh, Rajeev Kumar Gorantla, Rohan PLoS One Research Article Diabetic Macular Edema (DME) is an advanced stage of Diabetic Retinopathy (DR) and can lead to permanent vision loss. Currently, it affects 26.7 million people globally and on account of such a huge number of DME cases and the limited number of ophthalmologists, it is desirable to automate the diagnosis process. Computer-assisted, deep learning based diagnosis could help in early detection, following which precision medication can help to mitigate the vision loss. Method: In order to automate the screening of DME, we propose a novel DMENet Algorithm which is built on the pillars of Convolutional Neural Networks (CNNs). DMENet analyses the preprocessed color fundus images and passes it through a two-stage pipeline. The first stage detects the presence or absence of DME whereas the second stage takes only the positive cases and grades the images based on severity. In both the stages, we use a novel Hierarchical Ensemble of CNNs (HE-CNN). This paper uses two of the popular publicly available datasets IDRiD and MESSIDOR for classification. Preprocessing on the images is performed using morphological opening and gaussian kernel. The dataset is augmented to solve the class imbalance problem for better performance of the proposed model. Results: The proposed methodology achieved an average Accuracy of 96.12%, Sensitivity of 96.32%, Specificity of 95.84%, and F−1 score of 0.9609 on MESSIDOR and IDRiD datasets. Conclusion: These excellent results establish the validity of the proposed methodology for use in DME screening and solidifies the applicability of the HE-CNN classification technique in the domain of biomedical imaging. Public Library of Science 2020-02-10 /pmc/articles/PMC7010263/ /pubmed/32040475 http://dx.doi.org/10.1371/journal.pone.0220677 Text en © 2020 Singh, Gorantla http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Singh, Rajeev Kumar
Gorantla, Rohan
DMENet: Diabetic Macular Edema diagnosis using Hierarchical Ensemble of CNNs
title DMENet: Diabetic Macular Edema diagnosis using Hierarchical Ensemble of CNNs
title_full DMENet: Diabetic Macular Edema diagnosis using Hierarchical Ensemble of CNNs
title_fullStr DMENet: Diabetic Macular Edema diagnosis using Hierarchical Ensemble of CNNs
title_full_unstemmed DMENet: Diabetic Macular Edema diagnosis using Hierarchical Ensemble of CNNs
title_short DMENet: Diabetic Macular Edema diagnosis using Hierarchical Ensemble of CNNs
title_sort dmenet: diabetic macular edema diagnosis using hierarchical ensemble of cnns
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7010263/
https://www.ncbi.nlm.nih.gov/pubmed/32040475
http://dx.doi.org/10.1371/journal.pone.0220677
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