Cargando…

Metabolomics analysis of the hippocampus in a rat model of traumatic brain injury during the acute phase

BACKGROUND: Traumatic brain injury (TBI) has increased in rank among traumatic injuries worldwide. Traumatic brain injury is a serious obstacle given that its complex pathology represents a long‐term process. Recently, systems biology strategies such as metabolomics to investigate the multifactorial...

Descripción completa

Detalles Bibliográficos
Autores principales: Zheng, Fei, Zhou, Yan‐Tao, Feng, Dan‐Dan, Li, Peng‐Fei, Tang, Tao, Luo, Jie‐Kun, Wang, Yang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7010586/
https://www.ncbi.nlm.nih.gov/pubmed/31908160
http://dx.doi.org/10.1002/brb3.1520
_version_ 1783495896016617472
author Zheng, Fei
Zhou, Yan‐Tao
Feng, Dan‐Dan
Li, Peng‐Fei
Tang, Tao
Luo, Jie‐Kun
Wang, Yang
author_facet Zheng, Fei
Zhou, Yan‐Tao
Feng, Dan‐Dan
Li, Peng‐Fei
Tang, Tao
Luo, Jie‐Kun
Wang, Yang
author_sort Zheng, Fei
collection PubMed
description BACKGROUND: Traumatic brain injury (TBI) has increased in rank among traumatic injuries worldwide. Traumatic brain injury is a serious obstacle given that its complex pathology represents a long‐term process. Recently, systems biology strategies such as metabolomics to investigate the multifactorial nature of TBI have facilitated attempts to find biomarkers and probe molecular pathways for its diagnosis and therapy. METHODS: This study included a group of 20 rats with controlled cortical impact and a group of 20 sham rats. We utilized mNSS tests to investigate neurological metabolic impairments on day 1 and day 3. Furthermore, we applied metabolomics and bioinformatics to determine the metabolic perturbation caused by TBI during the acute period in the hippocampus tissue of controlled cortical impact (CCI) rats. Notably, TBI–protein–metabolite subnetworks identified from a database were assessed for associations between metabolites and TBI by the dysregulation of related enzymes and transporters. RESULTS: Our results identified 7 and 8 biomarkers on day 1 and day 3, respectively. Additionally, related pathway disorders showed effects on arginine and proline metabolism as well as taurine and hypotaurine metabolism on day 3 in acute TBI. Furthermore, according to metabolite–protein database searches, 25 metabolite–protein pairs were established as causally associated with TBI. Further, bioinformation indicated that these TBI‐associated proteins mainly take part in 5′‐nucleotidase activity and carboxylic acid transmembrane transport. In addition, interweaved networks were constructed to show that the development of TBI might be affected by metabolite‐related proteins and their protein pathways. CONCLUSION: The overall results show that acute TBI is susceptible to metabolic disorders, and the joint metabolite–protein network analysis provides a favorable prediction of TBI pathogenesis mechanisms in the brain. The signatures in the hippocampus might be promising for the development of biomarkers and pathways relevant to acute TBI and could further guide testable predictions of the underlying mechanism of TBI.
format Online
Article
Text
id pubmed-7010586
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher John Wiley and Sons Inc.
record_format MEDLINE/PubMed
spelling pubmed-70105862020-02-13 Metabolomics analysis of the hippocampus in a rat model of traumatic brain injury during the acute phase Zheng, Fei Zhou, Yan‐Tao Feng, Dan‐Dan Li, Peng‐Fei Tang, Tao Luo, Jie‐Kun Wang, Yang Brain Behav Original Research BACKGROUND: Traumatic brain injury (TBI) has increased in rank among traumatic injuries worldwide. Traumatic brain injury is a serious obstacle given that its complex pathology represents a long‐term process. Recently, systems biology strategies such as metabolomics to investigate the multifactorial nature of TBI have facilitated attempts to find biomarkers and probe molecular pathways for its diagnosis and therapy. METHODS: This study included a group of 20 rats with controlled cortical impact and a group of 20 sham rats. We utilized mNSS tests to investigate neurological metabolic impairments on day 1 and day 3. Furthermore, we applied metabolomics and bioinformatics to determine the metabolic perturbation caused by TBI during the acute period in the hippocampus tissue of controlled cortical impact (CCI) rats. Notably, TBI–protein–metabolite subnetworks identified from a database were assessed for associations between metabolites and TBI by the dysregulation of related enzymes and transporters. RESULTS: Our results identified 7 and 8 biomarkers on day 1 and day 3, respectively. Additionally, related pathway disorders showed effects on arginine and proline metabolism as well as taurine and hypotaurine metabolism on day 3 in acute TBI. Furthermore, according to metabolite–protein database searches, 25 metabolite–protein pairs were established as causally associated with TBI. Further, bioinformation indicated that these TBI‐associated proteins mainly take part in 5′‐nucleotidase activity and carboxylic acid transmembrane transport. In addition, interweaved networks were constructed to show that the development of TBI might be affected by metabolite‐related proteins and their protein pathways. CONCLUSION: The overall results show that acute TBI is susceptible to metabolic disorders, and the joint metabolite–protein network analysis provides a favorable prediction of TBI pathogenesis mechanisms in the brain. The signatures in the hippocampus might be promising for the development of biomarkers and pathways relevant to acute TBI and could further guide testable predictions of the underlying mechanism of TBI. John Wiley and Sons Inc. 2019-11-17 /pmc/articles/PMC7010586/ /pubmed/31908160 http://dx.doi.org/10.1002/brb3.1520 Text en © 2020 The Authors. Brain and Behavior published by Wiley Periodicals, Inc. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Research
Zheng, Fei
Zhou, Yan‐Tao
Feng, Dan‐Dan
Li, Peng‐Fei
Tang, Tao
Luo, Jie‐Kun
Wang, Yang
Metabolomics analysis of the hippocampus in a rat model of traumatic brain injury during the acute phase
title Metabolomics analysis of the hippocampus in a rat model of traumatic brain injury during the acute phase
title_full Metabolomics analysis of the hippocampus in a rat model of traumatic brain injury during the acute phase
title_fullStr Metabolomics analysis of the hippocampus in a rat model of traumatic brain injury during the acute phase
title_full_unstemmed Metabolomics analysis of the hippocampus in a rat model of traumatic brain injury during the acute phase
title_short Metabolomics analysis of the hippocampus in a rat model of traumatic brain injury during the acute phase
title_sort metabolomics analysis of the hippocampus in a rat model of traumatic brain injury during the acute phase
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7010586/
https://www.ncbi.nlm.nih.gov/pubmed/31908160
http://dx.doi.org/10.1002/brb3.1520
work_keys_str_mv AT zhengfei metabolomicsanalysisofthehippocampusinaratmodeloftraumaticbraininjuryduringtheacutephase
AT zhouyantao metabolomicsanalysisofthehippocampusinaratmodeloftraumaticbraininjuryduringtheacutephase
AT fengdandan metabolomicsanalysisofthehippocampusinaratmodeloftraumaticbraininjuryduringtheacutephase
AT lipengfei metabolomicsanalysisofthehippocampusinaratmodeloftraumaticbraininjuryduringtheacutephase
AT tangtao metabolomicsanalysisofthehippocampusinaratmodeloftraumaticbraininjuryduringtheacutephase
AT luojiekun metabolomicsanalysisofthehippocampusinaratmodeloftraumaticbraininjuryduringtheacutephase
AT wangyang metabolomicsanalysisofthehippocampusinaratmodeloftraumaticbraininjuryduringtheacutephase