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Small-worldness favours network inference in synthetic neural networks
A main goal in the analysis of a complex system is to infer its underlying network structure from time-series observations of its behaviour. The inference process is often done by using bi-variate similarity measures, such as the cross-correlation (CC) or mutual information (MI), however, the main f...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7010800/ https://www.ncbi.nlm.nih.gov/pubmed/32042036 http://dx.doi.org/10.1038/s41598-020-59198-7 |
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author | García, Rodrigo A. Martí, Arturo C. Cabeza, Cecilia Rubido, Nicolás |
author_facet | García, Rodrigo A. Martí, Arturo C. Cabeza, Cecilia Rubido, Nicolás |
author_sort | García, Rodrigo A. |
collection | PubMed |
description | A main goal in the analysis of a complex system is to infer its underlying network structure from time-series observations of its behaviour. The inference process is often done by using bi-variate similarity measures, such as the cross-correlation (CC) or mutual information (MI), however, the main factors favouring or hindering its success are still puzzling. Here, we use synthetic neuron models in order to reveal the main topological properties that frustrate or facilitate inferring the underlying network from CC measurements. Specifically, we use pulse-coupled Izhikevich neurons connected as in the Caenorhabditis elegans neural networks as well as in networks with similar randomness and small-worldness. We analyse the effectiveness and robustness of the inference process under different observations and collective dynamics, contrasting the results obtained from using membrane potentials and inter-spike interval time-series. We find that overall, small-worldness favours network inference and degree heterogeneity hinders it. In particular, success rates in C. elegans networks – that combine small-world properties with degree heterogeneity – are closer to success rates in Erdös-Rényi network models rather than those in Watts-Strogatz network models. These results are relevant to understand better the relationship between topological properties and function in different neural networks. |
format | Online Article Text |
id | pubmed-7010800 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-70108002020-02-21 Small-worldness favours network inference in synthetic neural networks García, Rodrigo A. Martí, Arturo C. Cabeza, Cecilia Rubido, Nicolás Sci Rep Article A main goal in the analysis of a complex system is to infer its underlying network structure from time-series observations of its behaviour. The inference process is often done by using bi-variate similarity measures, such as the cross-correlation (CC) or mutual information (MI), however, the main factors favouring or hindering its success are still puzzling. Here, we use synthetic neuron models in order to reveal the main topological properties that frustrate or facilitate inferring the underlying network from CC measurements. Specifically, we use pulse-coupled Izhikevich neurons connected as in the Caenorhabditis elegans neural networks as well as in networks with similar randomness and small-worldness. We analyse the effectiveness and robustness of the inference process under different observations and collective dynamics, contrasting the results obtained from using membrane potentials and inter-spike interval time-series. We find that overall, small-worldness favours network inference and degree heterogeneity hinders it. In particular, success rates in C. elegans networks – that combine small-world properties with degree heterogeneity – are closer to success rates in Erdös-Rényi network models rather than those in Watts-Strogatz network models. These results are relevant to understand better the relationship between topological properties and function in different neural networks. Nature Publishing Group UK 2020-02-10 /pmc/articles/PMC7010800/ /pubmed/32042036 http://dx.doi.org/10.1038/s41598-020-59198-7 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article García, Rodrigo A. Martí, Arturo C. Cabeza, Cecilia Rubido, Nicolás Small-worldness favours network inference in synthetic neural networks |
title | Small-worldness favours network inference in synthetic neural networks |
title_full | Small-worldness favours network inference in synthetic neural networks |
title_fullStr | Small-worldness favours network inference in synthetic neural networks |
title_full_unstemmed | Small-worldness favours network inference in synthetic neural networks |
title_short | Small-worldness favours network inference in synthetic neural networks |
title_sort | small-worldness favours network inference in synthetic neural networks |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7010800/ https://www.ncbi.nlm.nih.gov/pubmed/32042036 http://dx.doi.org/10.1038/s41598-020-59198-7 |
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