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The Functional Effects of Key Driver KRAS Mutations on Gene Expression in Lung Cancer
Lung cancer is a common malignant cancer. Kirsten rat sarcoma oncogene (KRAS) mutations have been considered as a key driver for lung cancers. KRAS p.G12C mutations were most predominant in NSCLC which was comprised about 11–16% of lung adenocarcinomas (p.G12C accounts for 45–50% of mutant KRAS). Bu...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7010953/ https://www.ncbi.nlm.nih.gov/pubmed/32117436 http://dx.doi.org/10.3389/fgene.2020.00017 |
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author | Zhang, Jisong Hu, Huihui Xu, Shan Jiang, Hanliang Zhu, Jihong Qin, E. He, Zhengfu Chen, Enguo |
author_facet | Zhang, Jisong Hu, Huihui Xu, Shan Jiang, Hanliang Zhu, Jihong Qin, E. He, Zhengfu Chen, Enguo |
author_sort | Zhang, Jisong |
collection | PubMed |
description | Lung cancer is a common malignant cancer. Kirsten rat sarcoma oncogene (KRAS) mutations have been considered as a key driver for lung cancers. KRAS p.G12C mutations were most predominant in NSCLC which was comprised about 11–16% of lung adenocarcinomas (p.G12C accounts for 45–50% of mutant KRAS). But it is still not clear how the KRAS mutation triggers lung cancers. To study the molecular mechanisms of KRAS mutation in lung cancer. We analyzed the gene expression profiles of 156 KRAS mutation samples and other negative samples with two stage feature selection approach: (1) minimal Redundancy Maximal Relevance (mRMR) and (2) Incremental Feature Selection (IFS). At last, 41 predictive genes for KRAS mutation were identified and a KRAS mutation predictor was constructed. Its leave one out cross validation MCC was 0.879. Our results were helpful for understanding the roles of KRAS mutation in lung cancer. |
format | Online Article Text |
id | pubmed-7010953 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-70109532020-02-28 The Functional Effects of Key Driver KRAS Mutations on Gene Expression in Lung Cancer Zhang, Jisong Hu, Huihui Xu, Shan Jiang, Hanliang Zhu, Jihong Qin, E. He, Zhengfu Chen, Enguo Front Genet Genetics Lung cancer is a common malignant cancer. Kirsten rat sarcoma oncogene (KRAS) mutations have been considered as a key driver for lung cancers. KRAS p.G12C mutations were most predominant in NSCLC which was comprised about 11–16% of lung adenocarcinomas (p.G12C accounts for 45–50% of mutant KRAS). But it is still not clear how the KRAS mutation triggers lung cancers. To study the molecular mechanisms of KRAS mutation in lung cancer. We analyzed the gene expression profiles of 156 KRAS mutation samples and other negative samples with two stage feature selection approach: (1) minimal Redundancy Maximal Relevance (mRMR) and (2) Incremental Feature Selection (IFS). At last, 41 predictive genes for KRAS mutation were identified and a KRAS mutation predictor was constructed. Its leave one out cross validation MCC was 0.879. Our results were helpful for understanding the roles of KRAS mutation in lung cancer. Frontiers Media S.A. 2020-02-04 /pmc/articles/PMC7010953/ /pubmed/32117436 http://dx.doi.org/10.3389/fgene.2020.00017 Text en Copyright © 2020 Zhang, Hu, Xu, Jiang, Zhu, Qin, He and Chen http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Genetics Zhang, Jisong Hu, Huihui Xu, Shan Jiang, Hanliang Zhu, Jihong Qin, E. He, Zhengfu Chen, Enguo The Functional Effects of Key Driver KRAS Mutations on Gene Expression in Lung Cancer |
title | The Functional Effects of Key Driver KRAS Mutations on Gene Expression in Lung Cancer |
title_full | The Functional Effects of Key Driver KRAS Mutations on Gene Expression in Lung Cancer |
title_fullStr | The Functional Effects of Key Driver KRAS Mutations on Gene Expression in Lung Cancer |
title_full_unstemmed | The Functional Effects of Key Driver KRAS Mutations on Gene Expression in Lung Cancer |
title_short | The Functional Effects of Key Driver KRAS Mutations on Gene Expression in Lung Cancer |
title_sort | functional effects of key driver kras mutations on gene expression in lung cancer |
topic | Genetics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7010953/ https://www.ncbi.nlm.nih.gov/pubmed/32117436 http://dx.doi.org/10.3389/fgene.2020.00017 |
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