Cargando…
High-speed automatic characterization of rare events in flow cytometric data
A new computational framework for FLow cytometric Analysis of Rare Events (FLARE) has been developed specifically for fast and automatic identification of rare cell populations in very large samples generated by platforms like multi-parametric flow cytometry. Using a hierarchical Bayesian model and...
Autores principales: | , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2020
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7012421/ https://www.ncbi.nlm.nih.gov/pubmed/32045462 http://dx.doi.org/10.1371/journal.pone.0228651 |
_version_ | 1783496229861195776 |
---|---|
author | Qi, Yuan Fang, Youhan Sinclair, David R. Guo, Shangqin Alberich-Jorda, Meritxell Lu, Jun Tenen, Daniel G. Kharas, Michael G. Pyne, Saumyadipta |
author_facet | Qi, Yuan Fang, Youhan Sinclair, David R. Guo, Shangqin Alberich-Jorda, Meritxell Lu, Jun Tenen, Daniel G. Kharas, Michael G. Pyne, Saumyadipta |
author_sort | Qi, Yuan |
collection | PubMed |
description | A new computational framework for FLow cytometric Analysis of Rare Events (FLARE) has been developed specifically for fast and automatic identification of rare cell populations in very large samples generated by platforms like multi-parametric flow cytometry. Using a hierarchical Bayesian model and information-sharing via parallel computation, FLARE rapidly explores the high-dimensional marker-space to detect highly rare populations that are consistent across multiple samples. Further it can focus within specified regions of interest in marker-space to detect subpopulations with desired precision. |
format | Online Article Text |
id | pubmed-7012421 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-70124212020-02-21 High-speed automatic characterization of rare events in flow cytometric data Qi, Yuan Fang, Youhan Sinclair, David R. Guo, Shangqin Alberich-Jorda, Meritxell Lu, Jun Tenen, Daniel G. Kharas, Michael G. Pyne, Saumyadipta PLoS One Research Article A new computational framework for FLow cytometric Analysis of Rare Events (FLARE) has been developed specifically for fast and automatic identification of rare cell populations in very large samples generated by platforms like multi-parametric flow cytometry. Using a hierarchical Bayesian model and information-sharing via parallel computation, FLARE rapidly explores the high-dimensional marker-space to detect highly rare populations that are consistent across multiple samples. Further it can focus within specified regions of interest in marker-space to detect subpopulations with desired precision. Public Library of Science 2020-02-11 /pmc/articles/PMC7012421/ /pubmed/32045462 http://dx.doi.org/10.1371/journal.pone.0228651 Text en © 2020 Qi et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Qi, Yuan Fang, Youhan Sinclair, David R. Guo, Shangqin Alberich-Jorda, Meritxell Lu, Jun Tenen, Daniel G. Kharas, Michael G. Pyne, Saumyadipta High-speed automatic characterization of rare events in flow cytometric data |
title | High-speed automatic characterization of rare events in flow cytometric data |
title_full | High-speed automatic characterization of rare events in flow cytometric data |
title_fullStr | High-speed automatic characterization of rare events in flow cytometric data |
title_full_unstemmed | High-speed automatic characterization of rare events in flow cytometric data |
title_short | High-speed automatic characterization of rare events in flow cytometric data |
title_sort | high-speed automatic characterization of rare events in flow cytometric data |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7012421/ https://www.ncbi.nlm.nih.gov/pubmed/32045462 http://dx.doi.org/10.1371/journal.pone.0228651 |
work_keys_str_mv | AT qiyuan highspeedautomaticcharacterizationofrareeventsinflowcytometricdata AT fangyouhan highspeedautomaticcharacterizationofrareeventsinflowcytometricdata AT sinclairdavidr highspeedautomaticcharacterizationofrareeventsinflowcytometricdata AT guoshangqin highspeedautomaticcharacterizationofrareeventsinflowcytometricdata AT alberichjordameritxell highspeedautomaticcharacterizationofrareeventsinflowcytometricdata AT lujun highspeedautomaticcharacterizationofrareeventsinflowcytometricdata AT tenendanielg highspeedautomaticcharacterizationofrareeventsinflowcytometricdata AT kharasmichaelg highspeedautomaticcharacterizationofrareeventsinflowcytometricdata AT pynesaumyadipta highspeedautomaticcharacterizationofrareeventsinflowcytometricdata |