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High-speed automatic characterization of rare events in flow cytometric data

A new computational framework for FLow cytometric Analysis of Rare Events (FLARE) has been developed specifically for fast and automatic identification of rare cell populations in very large samples generated by platforms like multi-parametric flow cytometry. Using a hierarchical Bayesian model and...

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Detalles Bibliográficos
Autores principales: Qi, Yuan, Fang, Youhan, Sinclair, David R., Guo, Shangqin, Alberich-Jorda, Meritxell, Lu, Jun, Tenen, Daniel G., Kharas, Michael G., Pyne, Saumyadipta
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7012421/
https://www.ncbi.nlm.nih.gov/pubmed/32045462
http://dx.doi.org/10.1371/journal.pone.0228651
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author Qi, Yuan
Fang, Youhan
Sinclair, David R.
Guo, Shangqin
Alberich-Jorda, Meritxell
Lu, Jun
Tenen, Daniel G.
Kharas, Michael G.
Pyne, Saumyadipta
author_facet Qi, Yuan
Fang, Youhan
Sinclair, David R.
Guo, Shangqin
Alberich-Jorda, Meritxell
Lu, Jun
Tenen, Daniel G.
Kharas, Michael G.
Pyne, Saumyadipta
author_sort Qi, Yuan
collection PubMed
description A new computational framework for FLow cytometric Analysis of Rare Events (FLARE) has been developed specifically for fast and automatic identification of rare cell populations in very large samples generated by platforms like multi-parametric flow cytometry. Using a hierarchical Bayesian model and information-sharing via parallel computation, FLARE rapidly explores the high-dimensional marker-space to detect highly rare populations that are consistent across multiple samples. Further it can focus within specified regions of interest in marker-space to detect subpopulations with desired precision.
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spelling pubmed-70124212020-02-21 High-speed automatic characterization of rare events in flow cytometric data Qi, Yuan Fang, Youhan Sinclair, David R. Guo, Shangqin Alberich-Jorda, Meritxell Lu, Jun Tenen, Daniel G. Kharas, Michael G. Pyne, Saumyadipta PLoS One Research Article A new computational framework for FLow cytometric Analysis of Rare Events (FLARE) has been developed specifically for fast and automatic identification of rare cell populations in very large samples generated by platforms like multi-parametric flow cytometry. Using a hierarchical Bayesian model and information-sharing via parallel computation, FLARE rapidly explores the high-dimensional marker-space to detect highly rare populations that are consistent across multiple samples. Further it can focus within specified regions of interest in marker-space to detect subpopulations with desired precision. Public Library of Science 2020-02-11 /pmc/articles/PMC7012421/ /pubmed/32045462 http://dx.doi.org/10.1371/journal.pone.0228651 Text en © 2020 Qi et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Qi, Yuan
Fang, Youhan
Sinclair, David R.
Guo, Shangqin
Alberich-Jorda, Meritxell
Lu, Jun
Tenen, Daniel G.
Kharas, Michael G.
Pyne, Saumyadipta
High-speed automatic characterization of rare events in flow cytometric data
title High-speed automatic characterization of rare events in flow cytometric data
title_full High-speed automatic characterization of rare events in flow cytometric data
title_fullStr High-speed automatic characterization of rare events in flow cytometric data
title_full_unstemmed High-speed automatic characterization of rare events in flow cytometric data
title_short High-speed automatic characterization of rare events in flow cytometric data
title_sort high-speed automatic characterization of rare events in flow cytometric data
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7012421/
https://www.ncbi.nlm.nih.gov/pubmed/32045462
http://dx.doi.org/10.1371/journal.pone.0228651
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