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High throughput phenotyping dataset related to seed and seedling traits of sugar beet genotypes
Several seed and seedling traits are measured to evaluate germination and emergence potential in relation with environmental conditions. More generally, these traits are also measured in the field of ecology as simple traits that can be correlated to other adaptative traits more difficult to measure...
Autores principales: | , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7013162/ https://www.ncbi.nlm.nih.gov/pubmed/32071980 http://dx.doi.org/10.1016/j.dib.2020.105201 |
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author | Ducournau, Sylvie Charrier, Aurélie Demilly, Didier Wagner, Marie-Hélène Trigui, Ghassen Dupont, Audrey Hamdy, Sherif Boudehri-Giresse, Karima Le Corre, Laurence Landais, Laurence Delanoue, Angélique Charruaud, Dorothée Henry, Karine Henry, Nicolas Ledroit, Lydie Dürr, Carolyne |
author_facet | Ducournau, Sylvie Charrier, Aurélie Demilly, Didier Wagner, Marie-Hélène Trigui, Ghassen Dupont, Audrey Hamdy, Sherif Boudehri-Giresse, Karima Le Corre, Laurence Landais, Laurence Delanoue, Angélique Charruaud, Dorothée Henry, Karine Henry, Nicolas Ledroit, Lydie Dürr, Carolyne |
author_sort | Ducournau, Sylvie |
collection | PubMed |
description | Several seed and seedling traits are measured to evaluate germination and emergence potential in relation with environmental conditions. More generally, these traits are also measured in the field of ecology as simple traits that can be correlated to other adaptative traits more difficult to measure on adult plants, as for example traits of the rooting system. Methods were developed for deep high throughput phenotyping of hundreds of genotypes from dry seed to the end of heterotrophic growth. The present dataset comes from a project on genotyping and phenotyping of populations of genotypes, with different geographic and genetic origins so as to increase genotypic diversity of sugar beet in terms of germination and early growth traits, evaluated at low temperatures. Data were collected in relation to the creation of the first sugar beet crop ontology. This dataset corresponds to the first automated phenotyping of a population of 198 genotypes and 4 commercial control varieties and is hosted on INRAE public depository under the reference number doi.org/10.15,454/AKNF4Q. The equipment and methods presented here are available on a phenotyping platform opened to collaborative research and adaptable for specific services for characterizing thousands of genotypes on different crops or other species. The phenotyping values can also be linked to genomic information to study the genetic determinism of the trait values. |
format | Online Article Text |
id | pubmed-7013162 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-70131622020-02-18 High throughput phenotyping dataset related to seed and seedling traits of sugar beet genotypes Ducournau, Sylvie Charrier, Aurélie Demilly, Didier Wagner, Marie-Hélène Trigui, Ghassen Dupont, Audrey Hamdy, Sherif Boudehri-Giresse, Karima Le Corre, Laurence Landais, Laurence Delanoue, Angélique Charruaud, Dorothée Henry, Karine Henry, Nicolas Ledroit, Lydie Dürr, Carolyne Data Brief Agricultural and Biological Science Several seed and seedling traits are measured to evaluate germination and emergence potential in relation with environmental conditions. More generally, these traits are also measured in the field of ecology as simple traits that can be correlated to other adaptative traits more difficult to measure on adult plants, as for example traits of the rooting system. Methods were developed for deep high throughput phenotyping of hundreds of genotypes from dry seed to the end of heterotrophic growth. The present dataset comes from a project on genotyping and phenotyping of populations of genotypes, with different geographic and genetic origins so as to increase genotypic diversity of sugar beet in terms of germination and early growth traits, evaluated at low temperatures. Data were collected in relation to the creation of the first sugar beet crop ontology. This dataset corresponds to the first automated phenotyping of a population of 198 genotypes and 4 commercial control varieties and is hosted on INRAE public depository under the reference number doi.org/10.15,454/AKNF4Q. The equipment and methods presented here are available on a phenotyping platform opened to collaborative research and adaptable for specific services for characterizing thousands of genotypes on different crops or other species. The phenotyping values can also be linked to genomic information to study the genetic determinism of the trait values. Elsevier 2020-01-27 /pmc/articles/PMC7013162/ /pubmed/32071980 http://dx.doi.org/10.1016/j.dib.2020.105201 Text en © 2020 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Agricultural and Biological Science Ducournau, Sylvie Charrier, Aurélie Demilly, Didier Wagner, Marie-Hélène Trigui, Ghassen Dupont, Audrey Hamdy, Sherif Boudehri-Giresse, Karima Le Corre, Laurence Landais, Laurence Delanoue, Angélique Charruaud, Dorothée Henry, Karine Henry, Nicolas Ledroit, Lydie Dürr, Carolyne High throughput phenotyping dataset related to seed and seedling traits of sugar beet genotypes |
title | High throughput phenotyping dataset related to seed and seedling traits of sugar beet genotypes |
title_full | High throughput phenotyping dataset related to seed and seedling traits of sugar beet genotypes |
title_fullStr | High throughput phenotyping dataset related to seed and seedling traits of sugar beet genotypes |
title_full_unstemmed | High throughput phenotyping dataset related to seed and seedling traits of sugar beet genotypes |
title_short | High throughput phenotyping dataset related to seed and seedling traits of sugar beet genotypes |
title_sort | high throughput phenotyping dataset related to seed and seedling traits of sugar beet genotypes |
topic | Agricultural and Biological Science |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7013162/ https://www.ncbi.nlm.nih.gov/pubmed/32071980 http://dx.doi.org/10.1016/j.dib.2020.105201 |
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