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High throughput phenotyping dataset related to seed and seedling traits of sugar beet genotypes

Several seed and seedling traits are measured to evaluate germination and emergence potential in relation with environmental conditions. More generally, these traits are also measured in the field of ecology as simple traits that can be correlated to other adaptative traits more difficult to measure...

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Autores principales: Ducournau, Sylvie, Charrier, Aurélie, Demilly, Didier, Wagner, Marie-Hélène, Trigui, Ghassen, Dupont, Audrey, Hamdy, Sherif, Boudehri-Giresse, Karima, Le Corre, Laurence, Landais, Laurence, Delanoue, Angélique, Charruaud, Dorothée, Henry, Karine, Henry, Nicolas, Ledroit, Lydie, Dürr, Carolyne
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7013162/
https://www.ncbi.nlm.nih.gov/pubmed/32071980
http://dx.doi.org/10.1016/j.dib.2020.105201
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author Ducournau, Sylvie
Charrier, Aurélie
Demilly, Didier
Wagner, Marie-Hélène
Trigui, Ghassen
Dupont, Audrey
Hamdy, Sherif
Boudehri-Giresse, Karima
Le Corre, Laurence
Landais, Laurence
Delanoue, Angélique
Charruaud, Dorothée
Henry, Karine
Henry, Nicolas
Ledroit, Lydie
Dürr, Carolyne
author_facet Ducournau, Sylvie
Charrier, Aurélie
Demilly, Didier
Wagner, Marie-Hélène
Trigui, Ghassen
Dupont, Audrey
Hamdy, Sherif
Boudehri-Giresse, Karima
Le Corre, Laurence
Landais, Laurence
Delanoue, Angélique
Charruaud, Dorothée
Henry, Karine
Henry, Nicolas
Ledroit, Lydie
Dürr, Carolyne
author_sort Ducournau, Sylvie
collection PubMed
description Several seed and seedling traits are measured to evaluate germination and emergence potential in relation with environmental conditions. More generally, these traits are also measured in the field of ecology as simple traits that can be correlated to other adaptative traits more difficult to measure on adult plants, as for example traits of the rooting system. Methods were developed for deep high throughput phenotyping of hundreds of genotypes from dry seed to the end of heterotrophic growth. The present dataset comes from a project on genotyping and phenotyping of populations of genotypes, with different geographic and genetic origins so as to increase genotypic diversity of sugar beet in terms of germination and early growth traits, evaluated at low temperatures. Data were collected in relation to the creation of the first sugar beet crop ontology. This dataset corresponds to the first automated phenotyping of a population of 198 genotypes and 4 commercial control varieties and is hosted on INRAE public depository under the reference number doi.org/10.15,454/AKNF4Q. The equipment and methods presented here are available on a phenotyping platform opened to collaborative research and adaptable for specific services for characterizing thousands of genotypes on different crops or other species. The phenotyping values can also be linked to genomic information to study the genetic determinism of the trait values.
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spelling pubmed-70131622020-02-18 High throughput phenotyping dataset related to seed and seedling traits of sugar beet genotypes Ducournau, Sylvie Charrier, Aurélie Demilly, Didier Wagner, Marie-Hélène Trigui, Ghassen Dupont, Audrey Hamdy, Sherif Boudehri-Giresse, Karima Le Corre, Laurence Landais, Laurence Delanoue, Angélique Charruaud, Dorothée Henry, Karine Henry, Nicolas Ledroit, Lydie Dürr, Carolyne Data Brief Agricultural and Biological Science Several seed and seedling traits are measured to evaluate germination and emergence potential in relation with environmental conditions. More generally, these traits are also measured in the field of ecology as simple traits that can be correlated to other adaptative traits more difficult to measure on adult plants, as for example traits of the rooting system. Methods were developed for deep high throughput phenotyping of hundreds of genotypes from dry seed to the end of heterotrophic growth. The present dataset comes from a project on genotyping and phenotyping of populations of genotypes, with different geographic and genetic origins so as to increase genotypic diversity of sugar beet in terms of germination and early growth traits, evaluated at low temperatures. Data were collected in relation to the creation of the first sugar beet crop ontology. This dataset corresponds to the first automated phenotyping of a population of 198 genotypes and 4 commercial control varieties and is hosted on INRAE public depository under the reference number doi.org/10.15,454/AKNF4Q. The equipment and methods presented here are available on a phenotyping platform opened to collaborative research and adaptable for specific services for characterizing thousands of genotypes on different crops or other species. The phenotyping values can also be linked to genomic information to study the genetic determinism of the trait values. Elsevier 2020-01-27 /pmc/articles/PMC7013162/ /pubmed/32071980 http://dx.doi.org/10.1016/j.dib.2020.105201 Text en © 2020 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Agricultural and Biological Science
Ducournau, Sylvie
Charrier, Aurélie
Demilly, Didier
Wagner, Marie-Hélène
Trigui, Ghassen
Dupont, Audrey
Hamdy, Sherif
Boudehri-Giresse, Karima
Le Corre, Laurence
Landais, Laurence
Delanoue, Angélique
Charruaud, Dorothée
Henry, Karine
Henry, Nicolas
Ledroit, Lydie
Dürr, Carolyne
High throughput phenotyping dataset related to seed and seedling traits of sugar beet genotypes
title High throughput phenotyping dataset related to seed and seedling traits of sugar beet genotypes
title_full High throughput phenotyping dataset related to seed and seedling traits of sugar beet genotypes
title_fullStr High throughput phenotyping dataset related to seed and seedling traits of sugar beet genotypes
title_full_unstemmed High throughput phenotyping dataset related to seed and seedling traits of sugar beet genotypes
title_short High throughput phenotyping dataset related to seed and seedling traits of sugar beet genotypes
title_sort high throughput phenotyping dataset related to seed and seedling traits of sugar beet genotypes
topic Agricultural and Biological Science
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7013162/
https://www.ncbi.nlm.nih.gov/pubmed/32071980
http://dx.doi.org/10.1016/j.dib.2020.105201
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