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Automatic Hierarchical Classification of Kelps Using Deep Residual Features
Across the globe, remote image data is rapidly being collected for the assessment of benthic communities from shallow to extremely deep waters on continental slopes to the abyssal seas. Exploiting this data is presently limited by the time it takes for experts to identify organisms found in these im...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7013955/ https://www.ncbi.nlm.nih.gov/pubmed/31941132 http://dx.doi.org/10.3390/s20020447 |
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author | Mahmood, Ammar Ospina, Ana Giraldo Bennamoun, Mohammed An, Senjian Sohel, Ferdous Boussaid, Farid Hovey, Renae Fisher, Robert B. Kendrick, Gary A. |
author_facet | Mahmood, Ammar Ospina, Ana Giraldo Bennamoun, Mohammed An, Senjian Sohel, Ferdous Boussaid, Farid Hovey, Renae Fisher, Robert B. Kendrick, Gary A. |
author_sort | Mahmood, Ammar |
collection | PubMed |
description | Across the globe, remote image data is rapidly being collected for the assessment of benthic communities from shallow to extremely deep waters on continental slopes to the abyssal seas. Exploiting this data is presently limited by the time it takes for experts to identify organisms found in these images. With this limitation in mind, a large effort has been made globally to introduce automation and machine learning algorithms to accelerate both classification and assessment of marine benthic biota. One major issue lies with organisms that move with swell and currents, such as kelps. This paper presents an automatic hierarchical classification method local binary classification as opposed to the conventional flat classification to classify kelps in images collected by autonomous underwater vehicles. The proposed kelp classification approach exploits learned feature representations extracted from deep residual networks. We show that these generic features outperform the traditional off-the-shelf CNN features and the conventional hand-crafted features. Experiments also demonstrate that the hierarchical classification method outperforms the traditional parallel multi-class classifications by a significant margin (90.0% vs. 57.6% and 77.2% vs. 59.0%) on Benthoz15 and Rottnest datasets respectively. Furthermore, we compare different hierarchical classification approaches and experimentally show that the sibling hierarchical training approach outperforms the inclusive hierarchical approach by a significant margin. We also report an application of our proposed method to study the change in kelp cover over time for annually repeated AUV surveys. |
format | Online Article Text |
id | pubmed-7013955 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-70139552020-03-09 Automatic Hierarchical Classification of Kelps Using Deep Residual Features Mahmood, Ammar Ospina, Ana Giraldo Bennamoun, Mohammed An, Senjian Sohel, Ferdous Boussaid, Farid Hovey, Renae Fisher, Robert B. Kendrick, Gary A. Sensors (Basel) Article Across the globe, remote image data is rapidly being collected for the assessment of benthic communities from shallow to extremely deep waters on continental slopes to the abyssal seas. Exploiting this data is presently limited by the time it takes for experts to identify organisms found in these images. With this limitation in mind, a large effort has been made globally to introduce automation and machine learning algorithms to accelerate both classification and assessment of marine benthic biota. One major issue lies with organisms that move with swell and currents, such as kelps. This paper presents an automatic hierarchical classification method local binary classification as opposed to the conventional flat classification to classify kelps in images collected by autonomous underwater vehicles. The proposed kelp classification approach exploits learned feature representations extracted from deep residual networks. We show that these generic features outperform the traditional off-the-shelf CNN features and the conventional hand-crafted features. Experiments also demonstrate that the hierarchical classification method outperforms the traditional parallel multi-class classifications by a significant margin (90.0% vs. 57.6% and 77.2% vs. 59.0%) on Benthoz15 and Rottnest datasets respectively. Furthermore, we compare different hierarchical classification approaches and experimentally show that the sibling hierarchical training approach outperforms the inclusive hierarchical approach by a significant margin. We also report an application of our proposed method to study the change in kelp cover over time for annually repeated AUV surveys. MDPI 2020-01-13 /pmc/articles/PMC7013955/ /pubmed/31941132 http://dx.doi.org/10.3390/s20020447 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Mahmood, Ammar Ospina, Ana Giraldo Bennamoun, Mohammed An, Senjian Sohel, Ferdous Boussaid, Farid Hovey, Renae Fisher, Robert B. Kendrick, Gary A. Automatic Hierarchical Classification of Kelps Using Deep Residual Features |
title | Automatic Hierarchical Classification of Kelps Using Deep Residual Features |
title_full | Automatic Hierarchical Classification of Kelps Using Deep Residual Features |
title_fullStr | Automatic Hierarchical Classification of Kelps Using Deep Residual Features |
title_full_unstemmed | Automatic Hierarchical Classification of Kelps Using Deep Residual Features |
title_short | Automatic Hierarchical Classification of Kelps Using Deep Residual Features |
title_sort | automatic hierarchical classification of kelps using deep residual features |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7013955/ https://www.ncbi.nlm.nih.gov/pubmed/31941132 http://dx.doi.org/10.3390/s20020447 |
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