Cargando…

DTranNER: biomedical named entity recognition with deep learning-based label-label transition model

BACKGROUND: Biomedical named-entity recognition (BioNER) is widely modeled with conditional random fields (CRF) by regarding it as a sequence labeling problem. The CRF-based methods yield structured outputs of labels by imposing connectivity between the labels. Recent studies for BioNER have reporte...

Descripción completa

Detalles Bibliográficos
Autores principales:	Hong, S. K., Lee, Jae-Gil
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2020
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7014657/ https://www.ncbi.nlm.nih.gov/pubmed/32046638 http://dx.doi.org/10.1186/s12859-020-3393-1

Ejemplares similares

Deep learning with language models improves named entity recognition for PharmaCoNER
por: Sun, Cong, et al.
Publicado: (2021)

DroNER: Dataset for drone named entity recognition
por: Silalahi, Swardiantara, et al.
Publicado: (2023)

CheNER: chemical named entity recognizer
por: Usié, Anabel, et al.
Publicado: (2014)

S-NER: A Concise and Efficient Span-Based Model for Named Entity Recognition
por: Yu, Jie, et al.
Publicado: (2022)

EduNER: a Chinese named entity recognition dataset for education research
por: Li, Xu, et al.
Publicado: (2023)

Improving the recall of biomedical named entity recognition with label re-correction and knowledge distillation
por: Zhou, Huiwei, et al.
Publicado: (2021)

SciNER: Extracting Named Entities from Scientific Literature
por: Hong, Zhi, et al.
Publicado: (2020)

Deep learning with word embeddings improves biomedical named entity recognition
por: Habibi, Maryam, et al.
Publicado: (2017)

Improving deep learning method for biomedical named entity recognition by using entity definition information
por: Xiong, Ying, et al.
Publicado: (2021)

BCC-NER: bidirectional, contextual clues named entity tagger for gene/protein mention recognition
por: Murugesan, Gurusamy, et al.
Publicado: (2017)

Transfer learning for biomedical named entity recognition with neural networks
por: Giorgi, John M, et al.
Publicado: (2018)

Hierarchical shared transfer learning for biomedical named entity recognition
por: Chai, Zhaoying, et al.
Publicado: (2022)

Multitask learning for biomedical named entity recognition with cross-sharing structure
por: Wang, Xi, et al.
Publicado: (2019)

CollaboNet: collaboration of deep neural networks for biomedical named entity recognition
por: Yoon, Wonjin, et al.
Publicado: (2019)

Biomedical named entity recognition using deep neural networks with contextual information
por: Cho, Hyejin, et al.
Publicado: (2019)

Various criteria in the evaluation of biomedical named entity recognition
por: Tsai, Richard Tzong-Han, et al.
Publicado: (2006)

Comparison of named entity recognition methodologies in biomedical documents
por: Song, Hye-Jeong, et al.
Publicado: (2018)

Towards reliable named entity recognition in the biomedical domain
por: Giorgi, John M, et al.
Publicado: (2020)

Improving biomedical named entity recognition with syntactic information
por: Tian, Yuanhe, et al.
Publicado: (2020)

GRAM-CNN: a deep learning approach with local context for named entity recognition in biomedical text
por: Zhu, Qile, et al.
Publicado: (2018)

CheNER: a tool for the identification of chemical entities and their classes in biomedical literature
por: Usié, Anabel, et al.
Publicado: (2015)

A Kernel-Based Approach for Biomedical Named Entity Recognition
por: Patra, Rakesh, et al.
Publicado: (2013)

Named Entity Recognition and Relation Detection for Biomedical Information Extraction
por: Perera, Nadeesha, et al.
Publicado: (2020)

LSTMVoter: chemical named entity recognition using a conglomerate of sequence labeling tools
por: Hemati, Wahed, et al.
Publicado: (2019)

A neural network multi-task learning approach to biomedical named entity recognition
por: Crichton, Gamal, et al.
Publicado: (2017)

Analyzing transfer learning impact in biomedical cross-lingual named entity recognition and normalization
por: Rivera-Zavala, Renzo M., et al.
Publicado: (2021)

How Do Your Biomedical Named Entity Recognition Models Generalize to Novel Entities?
Publicado: (2022)

Deep learning-based methods for natural hazard named entity recognition
por: Sun, Junlin, et al.
Publicado: (2022)

Evaluating Word Representation Features in Biomedical Named Entity Recognition Tasks
por: Tang, Buzhou, et al.
Publicado: (2014)

Long short-term memory RNN for biomedical named entity recognition
por: Lyu, Chen, et al.
Publicado: (2017)

Comparing general and specialized word embeddings for biomedical named entity recognition
por: Ramos-Vargas, Rigo E., et al.
Publicado: (2021)

Leveraging network analysis to evaluate biomedical named entity recognition tools
por: García del Valle, Eduardo P., et al.
Publicado: (2021)

Biomedical named entity recognition based on fusion multi-features embedding
por: Li, Meijing, et al.
Publicado: (2023)

Biomedical named entity recognition with the combined feature attention and fully-shared multi-task learning
por: Zhang, Zhiyu, et al.
Publicado: (2022)

Incorporating domain knowledge in chemical and biomedical named entity recognition with word representations
por: Munkhdalai, Tsendsuren, et al.
Publicado: (2015)

Exploiting and assessing multi-source data for supervised biomedical named entity recognition
por: Galea, Dieter, et al.
Publicado: (2018)

Knowledge-enhanced biomedical named entity recognition and normalization: application to proteins and genes
por: Zhou, Huiwei, et al.
Publicado: (2020)

A pre-training and self-training approach for biomedical named entity recognition
por: Gao, Shang, et al.
Publicado: (2021)

BERN2: an advanced neural biomedical named entity recognition and normalization tool
por: Sung, Mujeen, et al.
Publicado: (2022)

TrigNER: automatically optimized biomedical event trigger recognition on scientific documents
por: Campos, David, et al.
Publicado: (2014)

Cannot write session to /tmp/vufind_sessions/sess_lhtajkbnls6brs8hdplahsf8o5