Cargando…

Two-dimensional NMR lineshape analysis of single, multiple, zero and double quantum correlation experiments

NMR spectroscopy provides a powerful approach for the characterisation of chemical exchange and molecular interactions by analysis of series of experiments acquired over the course of a titration measurement. The appearance of NMR resonances undergoing chemical exchange depends on the frequency diff...

Descripción completa

Detalles Bibliográficos
Autores principales: Waudby, Christopher A., Ouvry, Margaux, Davis, Ben, Christodoulou, John
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Netherlands 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7015968/
https://www.ncbi.nlm.nih.gov/pubmed/31915980
http://dx.doi.org/10.1007/s10858-019-00297-7
_version_ 1783496892482584576
author Waudby, Christopher A.
Ouvry, Margaux
Davis, Ben
Christodoulou, John
author_facet Waudby, Christopher A.
Ouvry, Margaux
Davis, Ben
Christodoulou, John
author_sort Waudby, Christopher A.
collection PubMed
description NMR spectroscopy provides a powerful approach for the characterisation of chemical exchange and molecular interactions by analysis of series of experiments acquired over the course of a titration measurement. The appearance of NMR resonances undergoing chemical exchange depends on the frequency difference relative to the rate of exchange, and in the case of one-dimensional experiments chemical exchange regimes are well established and well known. However, two-dimensional experiments present additional complexity, as at least one additional frequency difference must be considered. Here we provide a systematic classification of chemical exchange regimes in two-dimensional NMR spectra. We highlight important differences between exchange in HSQC and HMQC experiments, that on a practical level result in more severe exchange broadening in HMQC spectra, but show that complementary alternatives to the HMQC are available in the form of HZQC and HDQC experiments. We present the longitudinal relaxation optimised SOFAST-H(Z/D)QC experiment for the simultaneous acquisition of sensitivity-enhanced HZQC and HDQC spectra, and the longitudinal and transverse relaxation optimised BEST-ZQ-TROSY for analysis of large molecular weight systems. We describe the application of these experiments to the characterisation of the interaction between the Hsp90 N-terminal domain and a small molecule ligand, and show that the independent analysis of HSQC, HMQC, HZQC and HDQC experiments provides improved confidence in the fitted dissociation constant and dissociation rate. Joint analysis of such data may provide improved sensitivity to detect and analyse more complex multi-state interaction mechanisms such as induced fit or conformational selection. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1007/s10858-019-00297-7) contains supplementary material, which is available to authorized users.
format Online
Article
Text
id pubmed-7015968
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher Springer Netherlands
record_format MEDLINE/PubMed
spelling pubmed-70159682020-02-28 Two-dimensional NMR lineshape analysis of single, multiple, zero and double quantum correlation experiments Waudby, Christopher A. Ouvry, Margaux Davis, Ben Christodoulou, John J Biomol NMR Article NMR spectroscopy provides a powerful approach for the characterisation of chemical exchange and molecular interactions by analysis of series of experiments acquired over the course of a titration measurement. The appearance of NMR resonances undergoing chemical exchange depends on the frequency difference relative to the rate of exchange, and in the case of one-dimensional experiments chemical exchange regimes are well established and well known. However, two-dimensional experiments present additional complexity, as at least one additional frequency difference must be considered. Here we provide a systematic classification of chemical exchange regimes in two-dimensional NMR spectra. We highlight important differences between exchange in HSQC and HMQC experiments, that on a practical level result in more severe exchange broadening in HMQC spectra, but show that complementary alternatives to the HMQC are available in the form of HZQC and HDQC experiments. We present the longitudinal relaxation optimised SOFAST-H(Z/D)QC experiment for the simultaneous acquisition of sensitivity-enhanced HZQC and HDQC spectra, and the longitudinal and transverse relaxation optimised BEST-ZQ-TROSY for analysis of large molecular weight systems. We describe the application of these experiments to the characterisation of the interaction between the Hsp90 N-terminal domain and a small molecule ligand, and show that the independent analysis of HSQC, HMQC, HZQC and HDQC experiments provides improved confidence in the fitted dissociation constant and dissociation rate. Joint analysis of such data may provide improved sensitivity to detect and analyse more complex multi-state interaction mechanisms such as induced fit or conformational selection. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1007/s10858-019-00297-7) contains supplementary material, which is available to authorized users. Springer Netherlands 2020-01-08 2020 /pmc/articles/PMC7015968/ /pubmed/31915980 http://dx.doi.org/10.1007/s10858-019-00297-7 Text en © The Author(s) 2020 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Waudby, Christopher A.
Ouvry, Margaux
Davis, Ben
Christodoulou, John
Two-dimensional NMR lineshape analysis of single, multiple, zero and double quantum correlation experiments
title Two-dimensional NMR lineshape analysis of single, multiple, zero and double quantum correlation experiments
title_full Two-dimensional NMR lineshape analysis of single, multiple, zero and double quantum correlation experiments
title_fullStr Two-dimensional NMR lineshape analysis of single, multiple, zero and double quantum correlation experiments
title_full_unstemmed Two-dimensional NMR lineshape analysis of single, multiple, zero and double quantum correlation experiments
title_short Two-dimensional NMR lineshape analysis of single, multiple, zero and double quantum correlation experiments
title_sort two-dimensional nmr lineshape analysis of single, multiple, zero and double quantum correlation experiments
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7015968/
https://www.ncbi.nlm.nih.gov/pubmed/31915980
http://dx.doi.org/10.1007/s10858-019-00297-7
work_keys_str_mv AT waudbychristophera twodimensionalnmrlineshapeanalysisofsinglemultiplezeroanddoublequantumcorrelationexperiments
AT ouvrymargaux twodimensionalnmrlineshapeanalysisofsinglemultiplezeroanddoublequantumcorrelationexperiments
AT davisben twodimensionalnmrlineshapeanalysisofsinglemultiplezeroanddoublequantumcorrelationexperiments
AT christodouloujohn twodimensionalnmrlineshapeanalysisofsinglemultiplezeroanddoublequantumcorrelationexperiments